Difference between revisions of "CALVIN-PWY"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=GERANYL-PP GERANYL-PP] == * smiles: ** CC(=CCCC(=CCOP([O-])(OP(=O)([O-])[O-])=O)C)C * inchi key...")
 
 
(2 intermediate revisions by the same user not shown)
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[[Category:Metabolite]]
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[[Category:Pathway]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=GERANYL-PP GERANYL-PP] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY] ==
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* smiles:
+
−
** CC(=CCCC(=CCOP([O-])(OP(=O)([O-])[O-])=O)C)C
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−
* inchi key:
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−
** InChIKey=GVVPGTZRZFNKDS-JXMROGBWSA-K
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* common name:
 
* common name:
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** geranyl diphosphate
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** Calvin-Benson-Bassham cycle
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* molecular weight:
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* taxonomic range:
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** 311.188   
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1117 TAX-1117]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-39119 TAX-39119]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-38254 TAX-38254]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-29197 TAX-29197]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-38410 TAX-38410]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-5747 TAX-5747]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2864 TAX-2864]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-877183 TAX-877183]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2836 TAX-2836]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3027 TAX-3027]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2830 TAX-2830]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2833 TAX-2833]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3041 TAX-3041]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33682 TAX-33682]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2763 TAX-2763]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2870 TAX-2870]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2825 TAX-2825]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 +
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
 
* Synonym(s):
 
* Synonym(s):
−
** geranyl-diphosphate
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** photosynthetic dark reactions
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** geranyl-pyrophosphate
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** photosynthetic CO2 fixation
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** GPP
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** reductive pentose phosphate pathway
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** geranyl-PP
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** Calvin cycle
−
** geranyl pyrophosphate
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** carbon fixation
−
** ω,E-geranyl diphosphate
+
** Calvin-Benson cycle
  
−
== Reaction(s) known to consume the compound ==
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== Reaction(s) found ==
−
* [[FPPSYN-RXN]]
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'''13''' reactions found over '''13''' reactions in the full pathway
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* [[TRANS-OCTAPRENYLTRANSTRANSFERASE-RXN]]
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* [[1.2.1.13-RXN]]
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== Reaction(s) known to produce the compound ==
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** 1 associated gene(s):
−
== Reaction(s) of unknown directionality ==
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*** [[CHC_T00009438001_1]]
−
* [[GPPSYN-RXN]]
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** 1 reconstruction source(s) associated:
 +
*** [[orthology-galdieria.sulphuraria]]
 +
* [[1TRANSKETO-RXN]]
 +
** 2 associated gene(s):
 +
*** [[CHC_T00009390001_1]]
 +
*** [[CHC_T00005040001_1]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-galdieria.sulphuraria]]
 +
*** [[orthology-arabidopsis_thaliana]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 +
* [[2TRANSKETO-RXN]]
 +
** 2 associated gene(s):
 +
*** [[CHC_T00005040001_1]]
 +
*** [[CHC_T00009390001_1]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-galdieria.sulphuraria]]
 +
*** [[orthology-arabidopsis_thaliana]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 +
* [[F16ALDOLASE-RXN]]
 +
** 2 associated gene(s):
 +
*** [[CHC_T00008586001]]
 +
*** [[CHC_T00008586001_1]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-galdieria.sulphuraria]]
 +
*** [[annotation-original_genome]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 +
* [[F16BDEPHOS-RXN]]
 +
** 6 associated gene(s):
 +
*** [[CHC_T00008570001_1]]
 +
*** [[CHC_T00008369001_1]]
 +
*** [[CHC_T00002260001_1]]
 +
*** [[CHC_T00008570001]]
 +
*** [[CHC_T00008537001]]
 +
*** [[CHC_T00008537001_1]]
 +
** 4 reconstruction source(s) associated:
 +
*** [[orthology-galdieria.sulphuraria]]
 +
*** [[annotation-original_genome]]
 +
*** [[orthology-arabidopsis_thaliana]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 +
* [[PHOSGLYPHOS-RXN]]
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** 3 associated gene(s):
 +
*** [[CHC_T00004105001_1]]
 +
*** [[CHC_T00009179001]]
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*** [[CHC_T00009179001_1]]
 +
** 4 reconstruction source(s) associated:
 +
*** [[orthology-galdieria.sulphuraria]]
 +
*** [[annotation-original_genome]]
 +
*** [[orthology-arabidopsis_thaliana]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 +
* [[PHOSPHORIBULOKINASE-RXN]]
 +
** 2 associated gene(s):
 +
*** [[CHC_T00008651001_1]]
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*** [[CHC_T00008651001]]
 +
** 4 reconstruction source(s) associated:
 +
*** [[orthology-galdieria.sulphuraria]]
 +
*** [[annotation-original_genome]]
 +
*** [[orthology-arabidopsis_thaliana]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 +
* [[RIB5PISOM-RXN]]
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** 1 associated gene(s):
 +
*** [[CHC_T00009264001_1]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-galdieria.sulphuraria]]
 +
*** [[orthology-arabidopsis_thaliana]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 +
* [[RIBULOSE-BISPHOSPHATE-CARBOXYLASE-RXN]]
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** 3 associated gene(s):
 +
*** [[CHC_955]]
 +
*** [[CHC_950]]
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*** [[CHC_T00006620001_1]]
 +
** 3 reconstruction source(s) associated:
 +
*** [[orthology-galdieria.sulphuraria]]
 +
*** [[annotation-original_genome]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 +
* [[RIBULP3EPIM-RXN]]
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** 3 associated gene(s):
 +
*** [[CHC_T00008270001_1]]
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*** [[CHC_T00006121001_1]]
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*** [[CHC_T00008270001]]
 +
** 4 reconstruction source(s) associated:
 +
*** [[orthology-galdieria.sulphuraria]]
 +
*** [[annotation-original_genome]]
 +
*** [[orthology-arabidopsis_thaliana]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 +
* [[SEDOBISALDOL-RXN]]
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** 1 associated gene(s):
 +
*** [[CHC_T00008586001_1]]
 +
** 2 reconstruction source(s) associated:
 +
*** [[orthology-arabidopsis_thaliana]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 +
* [[SEDOHEPTULOSE-BISPHOSPHATASE-RXN]]
 +
** 4 associated gene(s):
 +
*** [[CHC_T00008537001_1]]
 +
*** [[CHC_T00008570001_1]]
 +
*** [[CHC_T00008369001]]
 +
*** [[CHC_T00008369001_1]]
 +
** 4 reconstruction source(s) associated:
 +
*** [[orthology-galdieria.sulphuraria]]
 +
*** [[annotation-original_genome]]
 +
*** [[orthology-arabidopsis_thaliana]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 +
* [[TRIOSEPISOMERIZATION-RXN]]
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** 5 associated gene(s):
 +
*** [[CHC_T00009126001_1]]
 +
*** [[CHC_T00009523001_1]]
 +
*** [[CHC_T00009126001]]
 +
*** [[CHC_T00009545001]]
 +
*** [[CHC_T00009545001_1]]
 +
** 4 reconstruction source(s) associated:
 +
*** [[orthology-galdieria.sulphuraria]]
 +
*** [[annotation-original_genome]]
 +
*** [[orthology-arabidopsis_thaliana]]
 +
*** [[orthology-ectocarpus_siliculosus]]
 +
== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
−
* METABOLIGHTS : MTBLC58057
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* PLANTCYC : CALVIN-PWY
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* PUBCHEM:
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* ARACYC:
−
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=19379894 19379894]
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** [http://metacyc.org/ARA/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
−
* KNAPSACK : C00000846
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{{#set: common name=Calvin-Benson-Bassham cycle}}
−
* HMDB : HMDB01285
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{{#set: taxonomic range=TAX-1117}}
−
* LIGAND-CPD:
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{{#set: taxonomic range=TAX-39119}}
−
** [http://www.genome.jp/dbget-bin/www_bget?C00341 C00341]
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{{#set: taxonomic range=TAX-38254}}
−
* CHEMSPIDER:
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{{#set: taxonomic range=TAX-29197}}
−
** [http://www.chemspider.com/Chemical-Structure.14211068.html 14211068]
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{{#set: taxonomic range=TAX-38410}}
−
* CHEBI:
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{{#set: taxonomic range=TAX-5747}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=58057 58057]
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{{#set: taxonomic range=TAX-2864}}
−
* BIGG : grdp
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{{#set: taxonomic range=TAX-877183}}
−
{{#set: smiles=CC(=CCCC(=CCOP([O-])(OP(=O)([O-])[O-])=O)C)C}}
+
{{#set: taxonomic range=TAX-2836}}
−
{{#set: inchi key=InChIKey=GVVPGTZRZFNKDS-JXMROGBWSA-K}}
+
{{#set: taxonomic range=TAX-3027}}
−
{{#set: common name=geranyl diphosphate}}
+
{{#set: taxonomic range=TAX-2830}}
−
{{#set: molecular weight=311.188    }}
+
{{#set: taxonomic range=TAX-2833}}
−
{{#set: common name=geranyl-diphosphate|geranyl-pyrophosphate|GPP|geranyl-PP|geranyl pyrophosphate|ω,E-geranyl diphosphate}}
+
{{#set: taxonomic range=TAX-3041}}
−
{{#set: consumed by=FPPSYN-RXN|TRANS-OCTAPRENYLTRANSTRANSFERASE-RXN}}
+
{{#set: taxonomic range=TAX-33682}}
−
{{#set: consumed or produced by=GPPSYN-RXN}}
+
{{#set: taxonomic range=TAX-2763}}
 +
{{#set: taxonomic range=TAX-2870}}
 +
{{#set: taxonomic range=TAX-2825}}
 +
{{#set: taxonomic range=TAX-2}}
 +
{{#set: taxonomic range=TAX-33090}}
 +
{{#set: common name=photosynthetic dark reactions|photosynthetic CO2 fixation|reductive pentose phosphate pathway|Calvin cycle|carbon fixation|Calvin-Benson cycle}}
 +
{{#set: reaction found=13}}
 +
{{#set: total reaction=13}}
 +
{{#set: completion rate=100.0}}

Latest revision as of 16:32, 9 January 2019

Pathway CALVIN-PWY

Reaction(s) found

13 reactions found over 13 reactions in the full pathway

Reaction(s) not found

External links













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