Difference between revisions of "3-OXOACYL-ACP-SYNTH-BASE-RXN"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-1622 PWY-1622] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
 
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-1622 PWY-1622] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-OXOACYL-ACP-SYNTH-BASE-RXN 3-OXOACYL-ACP-SYNTH-BASE-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
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** formaldehyde assimilation I (serine pathway)
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** Beta-ketoacyl synthase
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* ec number:
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** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
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** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
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** [http://enzyme.expasy.org/EC/2.3.1.41 EC-2.3.1.41]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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* '''6''' reaction(s) found
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* With identifiers:
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** [[PEPCARBOX-RXN]]
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** 1 [[MALONYL-ACP]][c] '''+''' 1 [[ACETYL-ACP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[Acetoacetyl-ACPs]][c] '''+''' 1 [[ACP]][c]
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** [[RXN-15513]]
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* With common name(s):
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** [[MALATE-DEH-RXN]]
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** 1 a malonyl-[acp][c] '''+''' 1 an acetyl-[acp][c] '''+''' 1 H+[c] '''=>''' 1 CO2[c] '''+''' 1 an acetoacetyl-[acp][c] '''+''' 1 a holo-[acyl-carrier protein][c]
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** [[GLYOHMETRANS-RXN]]
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** [[2PGADEHYDRAT-RXN]]
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== Genes associated with this reaction  ==
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** [[HYDROXYPYRUVATE-REDUCTASE-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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== Reaction(s) not found ==
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* Gene: [[CHC_T00009465001]]
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* '''7''' reaction(s) not found
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** Source: [[annotation-original_genome]]
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** [http://metacyc.org/META/NEW-IMAGE?object=MALYL-COA-LYASE-RXN MALYL-COA-LYASE-RXN]
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*** Assignment: AUTOMATED-NAME-MATCH
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-2802 RXN-2802]
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* Gene: [[CHC_T00009465001_1]]
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** [http://metacyc.org/META/NEW-IMAGE?object=SERINE-GLYOXYLATE-AMINOTRANSFERASE-RXN SERINE-GLYOXYLATE-AMINOTRANSFERASE-RXN]
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** Source: [[orthology-galdieria.sulphuraria]]
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-2881 RXN-2881]
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** Source: [[orthology-ectocarpus_siliculosus]]
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** [http://metacyc.org/META/NEW-IMAGE?object=SERINE--GLYOXYLATE-AMINOTRANSFERASE-RXN SERINE--GLYOXYLATE-AMINOTRANSFERASE-RXN]
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** Source: [[orthology-arabidopsis_thaliana]]
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** [http://metacyc.org/META/NEW-IMAGE?object=MALATE--COA-LIGASE-RXN MALATE--COA-LIGASE-RXN]
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** Source: [[orthology-arabidopsis_thaliana]]
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** [http://metacyc.org/META/NEW-IMAGE?object=GKI-RXN GKI-RXN]
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== Pathways  ==
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* [[FASYN-INITIAL-PWY]], superpathway of fatty acid biosynthesis initiation (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=FASYN-INITIAL-PWY FASYN-INITIAL-PWY]
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** '''5''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-5966]], fatty acid biosynthesis initiation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5966 PWY-5966]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-5965]], fatty acid biosynthesis initiation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5965 PWY-5965]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-7388]], octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7388 PWY-7388]
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** '''8''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-galdieria.sulphuraria]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-arabidopsis_thaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-original_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-2}}
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* UNIPROT:
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{{#set: common name=formaldehyde assimilation I (serine pathway)}}
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** [http://www.uniprot.org/uniprot/P23902 P23902]
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{{#set: reaction found=6}}
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** [http://www.uniprot.org/uniprot/P0A6R0 P0A6R0]
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{{#set: reaction not found=7}}
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** [http://www.uniprot.org/uniprot/P49327 P49327]
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** [http://www.uniprot.org/uniprot/P43710 P43710]
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** [http://www.uniprot.org/uniprot/Q9HYR2 Q9HYR2]
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** [http://www.uniprot.org/uniprot/O67612 O67612]
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** [http://www.uniprot.org/uniprot/P20582 P20582]
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** [http://www.uniprot.org/uniprot/Q9JT63 Q9JT63]
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** [http://www.uniprot.org/uniprot/Q9JW56 Q9JW56]
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** [http://www.uniprot.org/uniprot/Q9PMZ6 Q9PMZ6]
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** [http://www.uniprot.org/uniprot/P43711 P43711]
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** [http://www.uniprot.org/uniprot/O25284 O25284]
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** [http://www.uniprot.org/uniprot/Q9JX65 Q9JX65]
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** [http://www.uniprot.org/uniprot/O34340 O34340]
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** [http://www.uniprot.org/uniprot/Q9PI63 Q9PI63]
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** [http://www.uniprot.org/uniprot/P0AAI5 P0AAI5]
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** [http://www.uniprot.org/uniprot/Q07510 Q07510]
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** [http://www.uniprot.org/uniprot/Q06097 Q06097]
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** [http://www.uniprot.org/uniprot/P41175 P41175]
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** [http://www.uniprot.org/uniprot/P31176 P31176]
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** [http://www.uniprot.org/uniprot/Q40027 Q40027]
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** [http://www.uniprot.org/uniprot/Q40028 Q40028]
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** [http://www.uniprot.org/uniprot/P73283 P73283]
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** [http://www.uniprot.org/uniprot/P0A953 P0A953]
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** [http://www.uniprot.org/uniprot/O64485 O64485]
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** [http://www.uniprot.org/uniprot/O65677 O65677]
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** [http://www.uniprot.org/uniprot/Q39310 Q39310]
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** [http://www.uniprot.org/uniprot/O23738 O23738]
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** [http://www.uniprot.org/uniprot/Q41134 Q41134]
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** [http://www.uniprot.org/uniprot/Q41135 Q41135]
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** [http://www.uniprot.org/uniprot/Q54208 Q54208]
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** [http://www.uniprot.org/uniprot/O54440 O54440]
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** [http://www.uniprot.org/uniprot/P55338 P55338]
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** [http://www.uniprot.org/uniprot/Q9RA31 Q9RA31]
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** [http://www.uniprot.org/uniprot/P12276 P12276]
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** [http://www.uniprot.org/uniprot/P12785 P12785]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Beta-ketoacyl synthase}}
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{{#set: ec number=EC-2.3.1.86}}
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{{#set: ec number=EC-2.3.1.85}}
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{{#set: ec number=EC-2.3.1.41}}
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{{#set: gene associated=CHC_T00009465001|CHC_T00009465001_1}}
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{{#set: in pathway=FASYN-INITIAL-PWY|PWY-5966|PWY-5965|PWY-7388}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=orthology-galdieria.sulphuraria|annotation-original_genome|orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 15:38, 9 January 2019

Reaction 3-OXOACYL-ACP-SYNTH-BASE-RXN

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • FASYN-INITIAL-PWY, superpathway of fatty acid biosynthesis initiation (E. coli): FASYN-INITIAL-PWY
    • 5 reactions found over 8 reactions in the full pathway
  • PWY-5966, fatty acid biosynthesis initiation II: PWY-5966
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-5965, fatty acid biosynthesis initiation III: PWY-5965
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7388, octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast): PWY-7388
    • 8 reactions found over 9 reactions in the full pathway

Reconstruction information

External links






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