Difference between revisions of "RXN0-2381"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=BADH-RXN BADH-RXN] == * direction: ** REVERSIBLE * ec number: ** [http://enzyme.expasy.org/EC/1.2.1...")
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=BADH-RXN BADH-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2381 RXN0-2381] ==
 
* direction:
 
* direction:
 
** REVERSIBLE
 
** REVERSIBLE
 +
* common name:
 +
** tryptophan synthase alpha chain
 +
** Tryptophan synthase subunit beta
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.2.1.8 EC-1.2.1.8]
+
** [http://enzyme.expasy.org/EC/4.1.2.8 EC-4.1.2.8]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[BETAINE_ALDEHYDE]][c] '''<=>''' 2 [[PROTON]][c] '''+''' 1 [[BETAINE]][c] '''+''' 1 [[NADH]][c]
+
** 1 [[INDOLE-3-GLYCEROL-P]][c] '''<=>''' 1 [[GAP]][c] '''+''' 1 [[INDOLE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 NAD+[c] '''+''' 1 H2O[c] '''+''' 1 betaine aldehyde[c] '''<=>''' 2 H+[c] '''+''' 1 glycine betaine[c] '''+''' 1 NADH[c]
+
** 1 (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate[c] '''<=>''' 1 D-glyceraldehyde 3-phosphate[c] '''+''' 1 indole[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[CHC_T00008575001_1]]
+
* Gene: [[CHC_T00009102001_1]]
−
** [[pantograph]]-[[a.taliana]]
+
** Source: [[orthology-galdieria.sulphuraria]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[CHC_T00008842001_1]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[CHC_T00008746001_1]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[CHC_1120]]
 +
** Source: [[annotation-original_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[CHC_T00008705001_1]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
* Gene: [[CHC_T00008401001]]
 +
** Source: [[annotation-original_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[CHC_T00007475001_1]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY1F-353]], glycine betaine biosynthesis III (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY1F-353 PWY1F-353]
+
* [[TRPSYN-PWY]], L-tryptophan biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=TRPSYN-PWY TRPSYN-PWY]
−
** '''1''' reactions found over '''3''' reactions in the full pathway
+
** '''6''' reactions found over '''6''' reactions in the full pathway
−
* [[BETSYN-PWY]], glycine betaine biosynthesis I (Gram-negative bacteria): [http://metacyc.org/META/NEW-IMAGE?object=BETSYN-PWY BETSYN-PWY]
+
* [[PWY-6949]], DIBOA-glucoside biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6949 PWY-6949]
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''1''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-3722]], glycine betaine biosynthesis II (Gram-positive bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-3722 PWY-3722]
+
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
−
* [[CHOLINE-BETAINE-ANA-PWY]], choline degradation I: [http://metacyc.org/META/NEW-IMAGE?object=CHOLINE-BETAINE-ANA-PWY CHOLINE-BETAINE-ANA-PWY]
+
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
−
* [[PWY-7494]], choline degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7494 PWY-7494]
+
−
** '''1''' reactions found over '''4''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-galdieria.sulphuraria]]
−
*** [[a.taliana]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-original_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30070 30070]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14081 14081]
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15305 15305]
+
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02565 R02565]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02340 R02340]
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/P17202 P17202]
+
−
** [http://www.uniprot.org/uniprot/P17445 P17445]
+
−
** [http://www.uniprot.org/uniprot/P28237 P28237]
+
−
** [http://www.uniprot.org/uniprot/P42757 P42757]
+
−
** [http://www.uniprot.org/uniprot/Q40024 Q40024]
+
−
** [http://www.uniprot.org/uniprot/O24174 O24174]
+
−
** [http://www.uniprot.org/uniprot/Q43828 Q43828]
+
−
** [http://www.uniprot.org/uniprot/Q43829 Q43829]
+
−
** [http://www.uniprot.org/uniprot/O22477 O22477]
+
 
{{#set: direction=REVERSIBLE}}
 
{{#set: direction=REVERSIBLE}}
−
{{#set: ec number=EC-1.2.1.8}}
+
{{#set: common name=tryptophan synthase alpha chain}}
−
{{#set: gene associated=CHC_T00008575001_1}}
+
{{#set: common name=Tryptophan synthase subunit beta}}
−
{{#set: in pathway=PWY1F-353|BETSYN-PWY|PWY-3722|CHOLINE-BETAINE-ANA-PWY|PWY-7494}}
+
{{#set: ec number=EC-4.1.2.8}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: gene associated=CHC_T00009102001_1|CHC_T00008842001_1|CHC_T00008746001_1|CHC_1120|CHC_T00008705001_1|CHC_T00008401001|CHC_T00007475001_1}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: in pathway=TRPSYN-PWY|PWY-6949}}
−
{{#set: reconstruction source=a.taliana}}
+
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=orthology-galdieria.sulphuraria|annotation-original_genome|orthology-ectocarpus_siliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 16:41, 9 January 2019

Reaction RXN0-2381

  • direction:
    • REVERSIBLE
  • common name:
    • tryptophan synthase alpha chain
    • Tryptophan synthase subunit beta
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate[c] <=> 1 D-glyceraldehyde 3-phosphate[c] + 1 indole[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • TRPSYN-PWY, L-tryptophan biosynthesis: TRPSYN-PWY
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-6949, DIBOA-glucoside biosynthesis: PWY-6949
    • 1 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=RXN0-2381&oldid=20663"