Difference between revisions of "RXN-16380"

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(Created page with "Category:Gene == Gene CHC_T00009233001 == * left end position: ** 140171 * transcription direction: ** NEGATIVE * right end position: ** 140927 * centisome position: ** 84...")
 
 
(3 intermediate revisions by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene CHC_T00009233001 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16380 RXN-16380] ==
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* left end position:
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* direction:
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** 140171
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** NEGATIVE
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** long-chain-fatty-acid-CoA ligase
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* right end position:
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* ec number:
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** 140927
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** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
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* centisome position:
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** 84.0762   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[CDPKIN-RXN]]
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* With identifiers:
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** original_genome
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** 1 [[CO-A]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[STEARIC_ACID]][c] '''=>''' 1 [[STEAROYL-COA]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c]
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***automated-name-match
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* With common name(s):
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* [[DADPKIN-RXN]]
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** 1 coenzyme A[c] '''+''' 1 ATP[c] '''+''' 1 stearate[c] '''=>''' 1 stearoyl-CoA[c] '''+''' 1 diphosphate[c] '''+''' 1 AMP[c]
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** original_genome
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***automated-name-match
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== Genes associated with this reaction  ==
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* [[DCDPKIN-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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** original_genome
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* Gene: [[CHC_T00009428001_1]]
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***automated-name-match
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** Source: [[orthology-galdieria.sulphuraria]]
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* [[DGDPKIN-RXN]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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** original_genome
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* Gene: [[CHC_T00008500001_1]]
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***automated-name-match
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** Source: [[orthology-galdieria.sulphuraria]]
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* [[DTDPKIN-RXN]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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** original_genome
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* Gene: [[CHC_T00008160001_1]]
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***automated-name-match
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** Source: [[orthology-galdieria.sulphuraria]]
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* [[DUDPKIN-RXN]]
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* Gene: [[CHC_T00009428001]]
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** original_genome
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** Source: [[annotation-original_genome]]
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***automated-name-match
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*** Assignment: AUTOMATED-NAME-MATCH
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* [[GDPKIN-RXN]]
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* Gene: [[CHC_T00008811001]]
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** original_genome
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** Source: [[annotation-original_genome]]
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***automated-name-match
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*** Assignment: AUTOMATED-NAME-MATCH
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* [[NUCLEOSIDE-DIP-KIN-RXN]]
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* Gene: [[CHC_T00008811001_1]]
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** original_genome
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** Source: [[orthology-galdieria.sulphuraria]]
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***automated-name-match
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== Pathways ==
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* [[RXN-14120]]
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* [[PWY-5989]], stearate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5989 PWY-5989]
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** original_genome
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** '''6''' reactions found over '''6''' reactions in the full pathway
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***automated-name-match
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== Reconstruction information  ==
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* [[RXN-14228]]
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* Category: [[orthology]]
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** original_genome
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** Source: [[orthology-galdieria.sulphuraria]]
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***automated-name-match
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*** Tool: [[pantograph]]
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* [[UDPKIN-RXN]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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** original_genome
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*** Tool: [[pantograph]]
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***automated-name-match
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* Category: [[annotation]]
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== Pathways associated ==
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** Source: [[annotation-original_genome]]
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* [[PWY-7210]]
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*** Tool: [[pathwaytools]]
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* [[PWY-7198]]
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* [[PWY-7176]]
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* [[PWY-7220]]
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* [[PWY-7184]]
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* [[PWY-7222]]
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* [[PWY-7205]]
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* [[PWY-7224]]
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* [[PWY-7197]]
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* [[PWY0-166]]
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* [[PWY-7227]]
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* [[PPGPPMET-PWY]]
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* [[PWY-7226]]
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* [[PWY-7221]]
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* [[PWY-6545]]
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* [[PWY-7187]]
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== External links  ==
 
== External links  ==
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{{#set: left end position=140171}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: transcription direction=NEGATIVE}}
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{{#set: common name=long-chain-fatty-acid-CoA ligase}}
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{{#set: right end position=140927}}
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{{#set: ec number=EC-6.2.1.3}}
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{{#set: centisome position=84.0762    }}
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{{#set: gene associated=CHC_T00009428001_1|CHC_T00008500001_1|CHC_T00008160001_1|CHC_T00009428001|CHC_T00008811001|CHC_T00008811001_1}}
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{{#set: reaction associated=CDPKIN-RXN|DADPKIN-RXN|DCDPKIN-RXN|DGDPKIN-RXN|DTDPKIN-RXN|DUDPKIN-RXN|GDPKIN-RXN|NUCLEOSIDE-DIP-KIN-RXN|RXN-14120|RXN-14228|UDPKIN-RXN}}
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{{#set: in pathway=PWY-5989}}
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{{#set: pathway associated=PWY-7210|PWY-7198|PWY-7176|PWY-7220|PWY-7184|PWY-7222|PWY-7205|PWY-7224|PWY-7197|PWY0-166|PWY-7227|PPGPPMET-PWY|PWY-7226|PWY-7221|PWY-6545|PWY-7187}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=orthology-galdieria.sulphuraria|annotation-original_genome|orthology-ectocarpus_siliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 15:41, 9 January 2019

Reaction RXN-16380

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • long-chain-fatty-acid-CoA ligase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 coenzyme A[c] + 1 ATP[c] + 1 stearate[c] => 1 stearoyl-CoA[c] + 1 diphosphate[c] + 1 AMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5989, stearate biosynthesis II (bacteria and plants): PWY-5989
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=RXN-16380&oldid=20673"