Difference between revisions of "PWY-5940"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.27.9-RXN 3.1.27.9-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.o...")
 
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.27.9-RXN 3.1.27.9-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5940 PWY-5940] ==
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* direction:
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* common name:
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** LEFT-TO-RIGHT
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** streptomycin biosynthesis
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* ec number:
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* taxonomic range:
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** [http://enzyme.expasy.org/EC/4.6.1.16 EC-4.6.1.16]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-201174 TAX-201174]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''2''' reactions found over '''18''' reactions in the full pathway
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** 1 [[CPD0-2350]][c] '''=>''' 1 [[Pre-tRNA-5-prime-half-molecules]][c] '''+''' 1 [[tRNA-Introns]][c] '''+''' 1 [[Pre-tRNA-3-prime-half-molecules]][c]
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* [[MYO-INOSITOL-2-DEHYDROGENASE-RXN]]
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* With common name(s):
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** 7 associated gene(s):
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** 1 a polycistronic tRNA precursor[c] '''=>''' 1 a 5'-half-tRNA molecule with a 2',3'-cyclic phosphate end[c] '''+''' 1 a tRNA intron with a 2',3'-cyclic phosphate and a 5'-hydroxyl terminus[c] '''+''' 1 a 3'-half-tRNA molecule with a 5'-OH end[c]
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*** [[CHC_T00009290001]]
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*** [[CHC_T00009290001_1]]
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== Genes associated with this reaction  ==
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*** [[CHC_T00007975001_1]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[CHC_T00009082001_1]]
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* [[CHC_T00001110001_1]]
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*** [[CHC_T00009082001]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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*** [[CHC_T00008315001]]
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== Pathways  ==
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*** [[CHC_T00008315001_1]]
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* [[PWY-6689]], tRNA splicing I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6689 PWY-6689]
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** 3 reconstruction source(s) associated:
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** '''1''' reactions found over '''7''' reactions in the full pathway
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*** [[orthology-galdieria.sulphuraria]]
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* [[PWY-7803]], tRNA splicing II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7803 PWY-7803]
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*** [[annotation-original_genome]]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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*** [[orthology-ectocarpus_siliculosus]]
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== Reconstruction information  ==
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* [[PHOSPHOGLUCMUT-RXN]]
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* [[orthology]]:
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** 4 associated gene(s):
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** [[pantograph]]:
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*** [[CHC_T00008779001_1]]
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*** [[galdieria.sulphuraria]]
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*** [[CHC_T00008779001]]
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*** [[CHC_T00003000001_1]]
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*** [[CHC_T00005896001_1]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-galdieria.sulphuraria]]
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*** [[annotation-original_genome]]
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*** [[orthology-ectocarpus_siliculosus]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=2.1.4.2-RXN 2.1.4.2-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=2.4.2.27-RXN 2.4.2.27-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=2.6.1.50-RXN 2.6.1.50-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=2.6.1.56-RXN 2.6.1.56-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=2.7.7.33-RXN 2.7.7.33-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=3.1.3.40-RXN 3.1.3.40-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11097 RXN-11097]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11098 RXN-11098]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11099 RXN-11099]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9467 RXN-9467]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9469 RXN-9469]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9470 RXN-9470]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9471 RXN-9471]
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* [http://metacyc.org/META/NEW-IMAGE?object=SCYLLO-INOSAMINE-KINASE-RXN SCYLLO-INOSAMINE-KINASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=STREPTOMYCIN-6-KINASE-RXN STREPTOMYCIN-6-KINASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=STREPTOMYCIN-6-PHOSPHATASE-RXN STREPTOMYCIN-6-PHOSPHATASE-RXN]
 
== External links  ==
 
== External links  ==
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* UNIPROT:
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* LIGAND-MAP:
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** [http://www.uniprot.org/uniprot/O07118 O07118]
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** [http://www.genome.jp/dbget-bin/www_bget?map00521 map00521]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=streptomycin biosynthesis}}
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{{#set: ec number=EC-4.6.1.16}}
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{{#set: taxonomic range=TAX-201174}}
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{{#set: gene associated=CHC_T00001110001_1}}
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{{#set: reaction found=2}}
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{{#set: in pathway=PWY-6689|PWY-7803}}
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{{#set: total reaction=18}}
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{{#set: reconstruction category=orthology}}
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{{#set: completion rate=11.0}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=galdieria.sulphuraria}}
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Latest revision as of 15:42, 9 January 2019

Pathway PWY-5940

  • common name:
    • streptomycin biosynthesis
  • taxonomic range:
  • Synonym(s):

Reaction(s) found

2 reactions found over 18 reactions in the full pathway

Reaction(s) not found

External links



Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=PWY-5940&oldid=20700"