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| − | [[Category:Reaction]] | + | [[Category:Pathway]] |
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACONITATEHYDR-RXN ACONITATEHYDR-RXN] == | + | == Pathway [http://metacyc.org/META/NEW-IMAGE?object=CITRULLINE-DEG-PWY CITRULLINE-DEG-PWY] == |
| − | * direction:
| + | |
| − | ** REVERSIBLE
| + | |
| | * common name: | | * common name: |
| − | ** cis-aconitate hydratase | + | ** L-citrulline degradation |
| − | ** Aconitate hydratase, mitochondrial | + | * taxonomic range: |
| | + | ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157] |
| | + | ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759] |
| | + | ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] |
| | * Synonym(s): | | * Synonym(s): |
| | | | |
| − | == Reaction Formula == | + | == Reaction(s) found == |
| − | * With identifiers:
| + | '''1''' reactions found over '''2''' reactions in the full pathway |
| − | ** 1 [[WATER]][c] '''+''' 1 [[CIS-ACONITATE]][c] '''<=>''' 1 [[THREO-DS-ISO-CITRATE]][c]
| + | * [[ORNCARBAMTRANSFER-RXN]] |
| − | * With common name(s):
| + | ** 1 associated gene(s): |
| − | ** 1 H2O[c] '''+''' 1 cis-aconitate[c] '''<=>''' 1 D-threo-isocitrate[c]
| + | *** [[CHC_T00005123001_1]] |
| − | | + | ** 3 reconstruction source(s) associated: |
| − | == Genes associated with this reaction ==
| + | *** [[orthology-galdieria.sulphuraria]] |
| − | Genes have been associated with this reaction based on different elements listed below.
| + | *** [[orthology-arabidopsis_thaliana]] |
| − | * [[CHC_T00008781001]]
| + | *** [[orthology-ectocarpus_siliculosus]] |
| − | ** ORIGINAL_GENOME
| + | == Reaction(s) not found == |
| − | ***AUTOMATED-NAME-MATCH
| + | * [http://metacyc.org/META/NEW-IMAGE?object=CARBAMATE-KINASE-RXN CARBAMATE-KINASE-RXN] |
| − | * [[CHC_T00008781001_1]]
| + | |
| − | ** [[pantograph]]-[[galdieria.sulphuraria]]
| + | |
| − | == Pathways ==
| + | |
| − | * [[FERMENTATION-PWY]], mixed acid fermentation: [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY]
| + | |
| − | ** '''11''' reactions found over '''16''' reactions in the full pathway
| + | |
| − | * [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913] | + | |
| − | ** '''10''' reactions found over '''11''' reactions in the full pathway | + | |
| − | * [[PWY-5690]], TCA cycle II (plants and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5690 PWY-5690]
| + | |
| − | ** '''9''' reactions found over '''9''' reactions in the full pathway | + | |
| − | * [[PWY-6549]], L-glutamine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6549 PWY-6549] | + | |
| − | ** '''9''' reactions found over '''9''' reactions in the full pathway | + | |
| − | * [[PWY-5392]], reductive TCA cycle II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5392 PWY-5392]
| + | |
| − | ** '''5''' reactions found over '''12''' reactions in the full pathway | + | |
| − | * [[P23-PWY]], reductive TCA cycle I: [http://metacyc.org/META/NEW-IMAGE?object=P23-PWY P23-PWY] | + | |
| − | ** '''9''' reactions found over '''12''' reactions in the full pathway
| + | |
| − | * [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY]
| + | |
| − | ** '''8''' reactions found over '''11''' reactions in the full pathway | + | |
| − | * [[GLYOXYLATE-BYPASS]], glyoxylate cycle: [http://metacyc.org/META/NEW-IMAGE?object=GLYOXYLATE-BYPASS GLYOXYLATE-BYPASS] | + | |
| − | ** '''4''' reactions found over '''6''' reactions in the full pathway | + | |
| − | * [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969] | + | |
| − | ** '''8''' reactions found over '''12''' reactions in the full pathway
| + | |
| − | * [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
| + | |
| − | ** '''9''' reactions found over '''18''' reactions in the full pathway
| + | |
| − | * [[REDCITCYC]], TCA cycle VIII (helicobacter): [http://metacyc.org/META/NEW-IMAGE?object=REDCITCYC REDCITCYC]
| + | |
| − | ** '''5''' reactions found over '''9''' reactions in the full pathway
| + | |
| − | * [[PWY-7254]], TCA cycle VII (acetate-producers): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7254 PWY-7254]
| + | |
| − | ** '''7''' reactions found over '''9''' reactions in the full pathway | + | |
| − | * [[PWY-7124]], ethylene biosynthesis V (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7124 PWY-7124]
| + | |
| − | ** '''8''' reactions found over '''10''' reactions in the full pathway
| + | |
| − | * [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398]
| + | |
| − | ** '''10''' reactions found over '''11''' reactions in the full pathway
| + | |
| − | * [[TCA]], TCA cycle I (prokaryotic): [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA]
| + | |
| − | ** '''9''' reactions found over '''10''' reactions in the full pathway
| + | |
| − | == Reconstruction information ==
| + | |
| − | * [[orthology]]:
| + | |
| − | ** [[pantograph]]:
| + | |
| − | *** [[galdieria.sulphuraria]]
| + | |
| − | * [[annotation]]:
| + | |
| − | ** [[pathwaytools]]:
| + | |
| − | *** [[original_genome]]
| + | |
| | == External links == | | == External links == |
| − | * RHEA: | + | * ARACYC: |
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22144 22144] | + | ** [http://metacyc.org/ARA/NEW-IMAGE?object=CITRULLINE-DEG-PWY CITRULLINE-DEG-PWY] |
| − | * LIGAND-RXN:
| + | {{#set: common name=L-citrulline degradation}} |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R01900 R01900]
| + | {{#set: taxonomic range=TAX-2157}} |
| − | {{#set: direction=REVERSIBLE}}
| + | {{#set: taxonomic range=TAX-2759}} |
| − | {{#set: common name=cis-aconitate hydratase}} | + | {{#set: taxonomic range=TAX-2}} |
| − | {{#set: common name=Aconitate hydratase, mitochondrial}} | + | {{#set: reaction found=1}} |
| − | {{#set: gene associated=CHC_T00008781001|CHC_T00008781001_1}} | + | {{#set: total reaction=2}} |
| − | {{#set: in pathway=FERMENTATION-PWY|PWY-5913|PWY-5690|PWY-6549|PWY-5392|P23-PWY|P105-PWY|GLYOXYLATE-BYPASS|PWY-6969|PWY-6728|REDCITCYC|PWY-7254|PWY-7124|PWY66-398|TCA}} | + | {{#set: completion rate=50.0}} |
| − | {{#set: reconstruction category=orthology}} | + | |
| − | {{#set: reconstruction tool=pantograph}} | + | |
| − | {{#set: reconstruction source=galdieria.sulphuraria}} | + | |
| − | {{#set: reconstruction category=annotation}}
| + | |
| − | {{#set: reconstruction tool=pathwaytools}}
| + | |
| − | {{#set: reconstruction source=original_genome}}
| + | |
