Difference between revisions of "ACONITATEHYDR-RXN"

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(Created page with "Category:Gene == Gene CHC_T00009225001 == * left end position: ** 5154 * transcription direction: ** NEGATIVE * right end position: ** 6614 * centisome position: ** 13.158...")
 
 
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene CHC_T00009225001 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACONITATEHYDR-RXN ACONITATEHYDR-RXN] ==
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* left end position:
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* direction:
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** 5154
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** REVERSIBLE
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* transcription direction:
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* common name:
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** NEGATIVE
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** cis-aconitate hydratase
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* right end position:
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** Aconitate hydratase, mitochondrial
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** 6614
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* centisome position:
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** 13.15803   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[XYLULOKIN-RXN]]
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* With identifiers:
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** original_genome
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** 1 [[WATER]][c] '''+''' 1 [[CIS-ACONITATE]][c] '''<=>''' 1 [[THREO-DS-ISO-CITRATE]][c]
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***automated-name-match
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* With common name(s):
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== Pathways associated ==
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** 1 H2O[c] '''+''' 1 cis-aconitate[c] '''<=>''' 1 D-threo-isocitrate[c]
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* [[LARABITOLUTIL-PWY]]
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* [[DARABITOLUTIL-PWY]]
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== Genes associated with this reaction  ==
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* [[XYLCAT-PWY]]
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[CHC_T00009087001_1]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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* Gene: [[CHC_T00008781001]]
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** Source: [[annotation-original_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[CHC_T00008781001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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== Pathways ==
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* [[FERMENTATION-PWY]], mixed acid fermentation: [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY]
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** '''11''' reactions found over '''16''' reactions in the full pathway
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* [[PWY-5690]], TCA cycle II (plants and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5690 PWY-5690]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7254]], TCA cycle VII (acetate-producers): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7254 PWY-7254]
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** '''7''' reactions found over '''9''' reactions in the full pathway
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* [[GLYOXYLATE-BYPASS]], glyoxylate cycle: [http://metacyc.org/META/NEW-IMAGE?object=GLYOXYLATE-BYPASS GLYOXYLATE-BYPASS]
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** '''4''' reactions found over '''6''' reactions in the full pathway
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* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY]
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** '''8''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913]
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** '''10''' reactions found over '''11''' reactions in the full pathway
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* [[TCA]], TCA cycle I (prokaryotic): [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA]
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** '''9''' reactions found over '''10''' reactions in the full pathway
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* [[P23-PWY]], reductive TCA cycle I: [http://metacyc.org/META/NEW-IMAGE?object=P23-PWY P23-PWY]
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** '''10''' reactions found over '''12''' reactions in the full pathway
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* [[REDCITCYC]], TCA cycle VIII (helicobacter): [http://metacyc.org/META/NEW-IMAGE?object=REDCITCYC REDCITCYC]
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** '''5''' reactions found over '''9''' reactions in the full pathway
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* [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398]
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** '''11''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-5392]], reductive TCA cycle II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5392 PWY-5392]
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** '''6''' reactions found over '''12''' reactions in the full pathway
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* [[PWY-6549]], L-glutamine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6549 PWY-6549]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
 +
** '''8''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-7124]], ethylene biosynthesis V (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7124 PWY-7124]
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** '''8''' reactions found over '''10''' reactions in the full pathway
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* [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
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** '''9''' reactions found over '''19''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-galdieria.sulphuraria]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-original_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=5154}}
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* RHEA:
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{{#set: transcription direction=NEGATIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22144 22144]
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{{#set: right end position=6614}}
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* LIGAND-RXN:
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{{#set: centisome position=13.15803    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R01900 R01900]
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{{#set: reaction associated=XYLULOKIN-RXN}}
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{{#set: direction=REVERSIBLE}}
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{{#set: pathway associated=LARABITOLUTIL-PWY|DARABITOLUTIL-PWY|XYLCAT-PWY}}
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{{#set: common name=cis-aconitate hydratase}}
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{{#set: common name=Aconitate hydratase, mitochondrial}}
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{{#set: gene associated=CHC_T00009087001_1|CHC_T00008781001|CHC_T00008781001_1}}
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{{#set: in pathway=FERMENTATION-PWY|PWY-5690|PWY-7254|GLYOXYLATE-BYPASS|P105-PWY|PWY-5913|TCA|P23-PWY|REDCITCYC|PWY66-398|PWY-5392|PWY-6549|PWY-6969|PWY-7124|PWY-6728}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=orthology-galdieria.sulphuraria|annotation-original_genome|orthology-ectocarpus_siliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 17:10, 9 January 2019

Reaction ACONITATEHYDR-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • cis-aconitate hydratase
    • Aconitate hydratase, mitochondrial
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • FERMENTATION-PWY, mixed acid fermentation: FERMENTATION-PWY
    • 11 reactions found over 16 reactions in the full pathway
  • PWY-5690, TCA cycle II (plants and fungi): PWY-5690
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-7254, TCA cycle VII (acetate-producers): PWY-7254
    • 7 reactions found over 9 reactions in the full pathway
  • GLYOXYLATE-BYPASS, glyoxylate cycle: GLYOXYLATE-BYPASS
    • 4 reactions found over 6 reactions in the full pathway
  • P105-PWY, TCA cycle IV (2-oxoglutarate decarboxylase): P105-PWY
    • 8 reactions found over 11 reactions in the full pathway
  • PWY-5913, partial TCA cycle (obligate autotrophs): PWY-5913
    • 10 reactions found over 11 reactions in the full pathway
  • TCA, TCA cycle I (prokaryotic): TCA
    • 9 reactions found over 10 reactions in the full pathway
  • P23-PWY, reductive TCA cycle I: P23-PWY
    • 10 reactions found over 12 reactions in the full pathway
  • REDCITCYC, TCA cycle VIII (helicobacter): REDCITCYC
    • 5 reactions found over 9 reactions in the full pathway
  • PWY66-398, TCA cycle III (animals): PWY66-398
    • 11 reactions found over 11 reactions in the full pathway
  • PWY-5392, reductive TCA cycle II: PWY-5392
    • 6 reactions found over 12 reactions in the full pathway
  • PWY-6549, L-glutamine biosynthesis III: PWY-6549
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-6969, TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): PWY-6969
    • 8 reactions found over 12 reactions in the full pathway
  • PWY-7124, ethylene biosynthesis V (engineered): PWY-7124
    • 8 reactions found over 10 reactions in the full pathway
  • PWY-6728, methylaspartate cycle: PWY-6728
    • 9 reactions found over 19 reactions in the full pathway

Reconstruction information

External links





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