Difference between revisions of "CHC 120"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRANSALDOL-RXN TRANSALDOL-RXN] == * direction: ** REVERSIBLE * ec number: ** [http://enzyme.expasy....")
 
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRANSALDOL-RXN TRANSALDOL-RXN] ==
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== Gene CHC_120 ==
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* direction:
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* common name:
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** REVERSIBLE
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** rne
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/2.2.1.2 EC-2.2.1.2]
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** 15562
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* transcription direction:
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** POSITIVE
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* right end position:
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** 17043
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* centisome position:
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** 8.641427   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[3.1.26.12-RXN]]
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** 1 [[GAP]][c] '''+''' 1 [[D-SEDOHEPTULOSE-7-P]][c] '''<=>''' 1 [[FRUCTOSE-6P]][c] '''+''' 1 [[ERYTHROSE-4P]][c]
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** Source: [[annotation-original_genome]]
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* With common name(s):
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*** Assignment: automated-name-match
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** 1 D-glyceraldehyde 3-phosphate[c] '''+''' 1 D-sedoheptulose 7-phosphate[c] '''<=>''' 1 &beta;-D-fructofuranose 6-phosphate[c] '''+''' 1 D-erythrose 4-phosphate[c]
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* Reaction: [[RXN0-6478]]
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** Source: [[annotation-original_genome]]
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== Genes associated with this reaction  ==
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*** Assignment: automated-name-match
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN0-6485]]
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* [[CHC_T00000120001_1]]
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** Source: [[annotation-original_genome]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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*** Assignment: automated-name-match
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** [[pantograph]]-[[a.taliana]]
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* Reaction: [[RXN0-6521]]
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** [[pantograph]]-[[a.taliana]]
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** Source: [[annotation-original_genome]]
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== Pathways  ==
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*** Assignment: automated-name-match
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* [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY]
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* Reaction: [[RXN0-6522]]
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** '''11''' reactions found over '''15''' reactions in the full pathway
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** Source: [[annotation-original_genome]]
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* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY]
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*** Assignment: automated-name-match
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** '''10''' reactions found over '''12''' reactions in the full pathway
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* Reaction: [[RXN0-6523]]
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* [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723]
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** Source: [[annotation-original_genome]]
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** '''10''' reactions found over '''10''' reactions in the full pathway
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*** Assignment: automated-name-match
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* [[PWY-1861]], formaldehyde assimilation II (RuMP Cycle): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861]
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== Pathways associated ==
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** '''7''' reactions found over '''9''' reactions in the full pathway
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* [[PWY0-1479]]
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* [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch): [http://metacyc.org/META/NEW-IMAGE?object=NONOXIPENT-PWY NONOXIPENT-PWY]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[galdieria.sulphuraria]]
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*** [[a.taliana]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: common name=rne}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17053 17053]
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{{#set: left end position=15562}}
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* LIGAND-RXN:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01827 R01827]
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{{#set: right end position=17043}}
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* UNIPROT:
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{{#set: centisome position=8.641427    }}
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** [http://www.uniprot.org/uniprot/P17441 P17441]
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{{#set: reaction associated=3.1.26.12-RXN|RXN0-6478|RXN0-6485|RXN0-6521|RXN0-6522|RXN0-6523}}
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** [http://www.uniprot.org/uniprot/P17440 P17440]
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{{#set: pathway associated=PWY0-1479}}
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** [http://www.uniprot.org/uniprot/P37837 P37837]
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** [http://www.uniprot.org/uniprot/P45055 P45055]
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** [http://www.uniprot.org/uniprot/Q9JSU1 Q9JSU1]
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** [http://www.uniprot.org/uniprot/P0A867 P0A867]
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** [http://www.uniprot.org/uniprot/Q9PIL5 Q9PIL5]
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** [http://www.uniprot.org/uniprot/Q58370 Q58370]
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** [http://www.uniprot.org/uniprot/P34214 P34214]
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** [http://www.uniprot.org/uniprot/P0A870 P0A870]
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** [http://www.uniprot.org/uniprot/P15019 P15019]
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** [http://www.uniprot.org/uniprot/P53228 P53228]
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** [http://www.uniprot.org/uniprot/P51778 P51778]
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** [http://www.uniprot.org/uniprot/P72797 P72797]
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** [http://www.uniprot.org/uniprot/O04894 O04894]
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** [http://www.uniprot.org/uniprot/P78865 P78865]
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{{#set: direction=REVERSIBLE}}
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{{#set: ec number=EC-2.2.1.2}}
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{{#set: gene associated=CHC_T00000120001_1}}
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{{#set: in pathway=P124-PWY|P185-PWY|PWY-5723|PWY-1861|NONOXIPENT-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=galdieria.sulphuraria|a.taliana}}
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Latest revision as of 16:18, 9 January 2019

Gene CHC_120

  • common name:
    • rne
  • left end position:
    • 15562
  • transcription direction:
    • POSITIVE
  • right end position:
    • 17043
  • centisome position:
    • 8.641427
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=CHC_120&oldid=21563"