Difference between revisions of "GLYCOGEN-BRANCH-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=3-CARBOXY-3-HYDROXY-ISOCAPROATE 3-CARBOXY-3-HYDROXY-ISOCAPROATE] == * smiles: ** CC(C)C(O)(CC(=...")
 
 
(2 intermediate revisions by the same user not shown)
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=3-CARBOXY-3-HYDROXY-ISOCAPROATE 3-CARBOXY-3-HYDROXY-ISOCAPROATE] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYCOGEN-BRANCH-RXN GLYCOGEN-BRANCH-RXN] ==
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* smiles:
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* direction:
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** CC(C)C(O)(CC(=O)[O-])C([O-])=O
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=BITYXLXUCSKTJS-ZETCQYMHSA-L
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* common name:
 
* common name:
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** (2S)-2-isopropylmalate
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** 1,4-alpha-Glucan branching enzyme
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* molecular weight:
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* ec number:
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** 174.153   
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** [http://enzyme.expasy.org/EC/2.4.1.18 EC-2.4.1.18]
 
* Synonym(s):
 
* Synonym(s):
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** 3-hydroxy-4-methyl-3-carboxypentanoate
 
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** 3-carboxy-3-hydroxy-4-methylpentanoate
 
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** 3-carboxy-3-hydroxy-isocaproate
 
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** α-isopropylmalate
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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== Reaction(s) known to produce the compound ==
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* With identifiers:
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* [[2-ISOPROPYLMALATESYN-RXN]]
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** 1 [[1-4-alpha-D-Glucan]][c] '''=>''' 1 [[Glycogens]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
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* [[3-ISOPROPYLMALISOM-RXN]]
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** 1 a 1,4-α-D-glucan[c] '''=>''' 1 a glycogen[c]
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* [[RXN-13163]]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[CHC_T00008662001]]
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** Source: [[annotation-original_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[CHC_T00008662001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
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== Pathways  ==
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* [[GLYCOGENSYNTH-PWY]], glycogen biosynthesis I (from ADP-D-Glucose): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOGENSYNTH-PWY GLYCOGENSYNTH-PWY]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-galdieria.sulphuraria]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-original_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* PUBCHEM:
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* UNIPROT:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=6419726 6419726]
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** [http://www.uniprot.org/uniprot/Q04446 Q04446]
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* HMDB : HMDB00402
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** [http://www.uniprot.org/uniprot/P30539 P30539]
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* LIGAND-CPD:
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** [http://www.uniprot.org/uniprot/P30537 P30537]
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** [http://www.genome.jp/dbget-bin/www_bget?C02504 C02504]
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** [http://www.uniprot.org/uniprot/P45177 P45177]
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* CHEMSPIDER:
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** [http://www.uniprot.org/uniprot/P16954 P16954]
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** [http://www.chemspider.com/Chemical-Structure.4925359.html 4925359]
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** [http://www.uniprot.org/uniprot/Q41740 Q41740]
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* CHEBI:
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** [http://www.uniprot.org/uniprot/Q01401 Q01401]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=1178 1178]
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** [http://www.uniprot.org/uniprot/P07762 P07762]
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* BIGG : 3c3hmp
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** [http://www.uniprot.org/uniprot/Q7M284 Q7M284]
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{{#set: smiles=CC(C)C(O)(CC(=O)[O-])C([O-])=O}}
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** [http://www.uniprot.org/uniprot/P30538 P30538]
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{{#set: inchi key=InChIKey=BITYXLXUCSKTJS-ZETCQYMHSA-L}}
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** [http://www.uniprot.org/uniprot/Q08809 Q08809]
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{{#set: common name=(2S)-2-isopropylmalate}}
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** [http://www.uniprot.org/uniprot/Q59243 Q59243]
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{{#set: molecular weight=174.153    }}
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** [http://www.uniprot.org/uniprot/Q40733 Q40733]
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{{#set: common name=3-hydroxy-4-methyl-3-carboxypentanoate|3-carboxy-3-hydroxy-4-methylpentanoate|3-carboxy-3-hydroxy-isocaproate|α-isopropylmalate}}
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** [http://www.uniprot.org/uniprot/Q59832 Q59832]
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{{#set: produced by=2-ISOPROPYLMALATESYN-RXN}}
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** [http://www.uniprot.org/uniprot/P30924 P30924]
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{{#set: consumed or produced by=3-ISOPROPYLMALISOM-RXN|RXN-13163}}
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** [http://www.uniprot.org/uniprot/P39118 P39118]
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** [http://www.uniprot.org/uniprot/P52980 P52980]
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** [http://www.uniprot.org/uniprot/P32775 P32775]
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** [http://www.uniprot.org/uniprot/Q42526 Q42526]
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** [http://www.uniprot.org/uniprot/Q42531 Q42531]
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** [http://www.uniprot.org/uniprot/Q59833 Q59833]
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** [http://www.uniprot.org/uniprot/O81387 O81387]
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** [http://www.uniprot.org/uniprot/O24421 O24421]
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** [http://www.uniprot.org/uniprot/Q08047 Q08047]
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** [http://www.uniprot.org/uniprot/O24393 O24393]
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** [http://www.uniprot.org/uniprot/Q41058 Q41058]
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** [http://www.uniprot.org/uniprot/Q41059 Q41059]
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** [http://www.uniprot.org/uniprot/P93691 P93691]
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** [http://www.uniprot.org/uniprot/O04074 O04074]
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** [http://www.uniprot.org/uniprot/O24397 O24397]
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** [http://www.uniprot.org/uniprot/O49953 O49953]
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** [http://www.uniprot.org/uniprot/O04864 O04864]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=1,4-alpha-Glucan branching enzyme}}
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{{#set: ec number=EC-2.4.1.18}}
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{{#set: gene associated=CHC_T00008662001|CHC_T00008662001_1}}
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{{#set: in pathway=GLYCOGENSYNTH-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=orthology-galdieria.sulphuraria|annotation-original_genome}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 17:20, 9 January 2019

Reaction GLYCOGEN-BRANCH-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 1,4-alpha-Glucan branching enzyme
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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