Difference between revisions of "PWY-7840"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMIN-RXN GLUTAMIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ferredoxin-dependent...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMIN-RXN GLUTAMIN-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7840 PWY-7840] ==
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* direction:
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** LEFT-TO-RIGHT
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* common name:
 
* common name:
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** ferredoxin-dependent glutamate synthase
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** gala-series glycosphingolipids biosynthesis
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** carbamoyl phosphate synthase small subunit
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* taxonomic range:
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** GMP synthase (glutamine-hydrolysing)
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-33208]
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* ec number:
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** [http://enzyme.expasy.org/EC/3.5.1.38 EC-3.5.1.38]
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** [http://enzyme.expasy.org/EC/3.5.1.2 EC-3.5.1.2]
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* Synonym(s):
 
* Synonym(s):
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** ganglioside GM4 biosynthesis
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** galaglycosphingolipids biosynthesis
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''2''' reactions found over '''5''' reactions in the full pathway
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** 1 [[GLN]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[GLT]][c]
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* [[RXN-18301]]
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* With common name(s):
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** 3 associated gene(s):
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** 1 L-glutamine[c] '''+''' 1 H2O[c] '''=>''' 1 ammonium[c] '''+''' 1 L-glutamate[c]
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*** [[CHC_T00009336001]]
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*** [[CHC_T00008551001]]
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== Genes associated with this reaction  ==
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*** [[CHC_T00008762001]]
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Genes have been associated with this reaction based on different elements listed below.
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** 1 reconstruction source(s) associated:
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* [[CHC_T00000667001_1]]
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*** [[annotation-original_genome]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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* [[RXN-18303]]
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* [[CHC_T00010056001_1]]
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** 3 associated gene(s):
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** [[pantograph]]-[[galdieria.sulphuraria]]
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*** [[CHC_T00009336001]]
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* [[CHC_70]]
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*** [[CHC_T00008551001]]
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** ORIGINAL_GENOME
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*** [[CHC_T00008762001]]
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***AUTOMATED-NAME-MATCH
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** 1 reconstruction source(s) associated:
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* [[CHC_1080]]
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*** [[annotation-original_genome]]
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** ORIGINAL_GENOME
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== Reaction(s) not found ==
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***AUTOMATED-NAME-MATCH
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* [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.47-RXN 2.4.1.47-RXN]
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* [[CHC_T00004458001_1]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-18291 RXN-18291]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-18302 RXN-18302]
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* [[CHC_T00008596001_1]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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* [[CHC_T00009427001]]
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** ORIGINAL_GENOME
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***AUTOMATED-NAME-MATCH
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* [[CHC_T00007798001_1]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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== Pathways  ==
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* [[GLUTAMINDEG-PWY]], L-glutamine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMINDEG-PWY GLUTAMINDEG-PWY]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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* [[CITRULBIO-PWY]], L-citrulline biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=CITRULBIO-PWY CITRULBIO-PWY]
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** '''6''' reactions found over '''8''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[galdieria.sulphuraria]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[original_genome]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: common name=gala-series glycosphingolipids biosynthesis}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15889 15889]
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{{#set: taxonomic range=TAX-33208}}
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* LIGAND-RXN:
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{{#set: common name=ganglioside GM4 biosynthesis|galaglycosphingolipids biosynthesis}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00256 R00256]
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{{#set: reaction found=2}}
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* UNIPROT:
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{{#set: total reaction=5}}
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** [http://www.uniprot.org/uniprot/P10172 P10172]
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{{#set: completion rate=40.0}}
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** [http://www.uniprot.org/uniprot/P28492 P28492]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=ferredoxin-dependent glutamate synthase}}
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{{#set: common name=carbamoyl phosphate synthase small subunit}}
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{{#set: common name=GMP synthase (glutamine-hydrolysing)}}
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{{#set: ec number=EC-3.5.1.38}}
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{{#set: ec number=EC-3.5.1.2}}
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{{#set: gene associated=CHC_T00000667001_1|CHC_T00010056001_1|CHC_70|CHC_1080|CHC_T00004458001_1|CHC_T00008596001_1|CHC_T00009427001|CHC_T00007798001_1}}
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{{#set: in pathway=GLUTAMINDEG-PWY|CITRULBIO-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=galdieria.sulphuraria}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=original_genome}}
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Latest revision as of 17:23, 9 January 2019

Pathway PWY-7840

  • common name:
    • gala-series glycosphingolipids biosynthesis
  • taxonomic range:
  • Synonym(s):
    • ganglioside GM4 biosynthesis
    • galaglycosphingolipids biosynthesis

Reaction(s) found

2 reactions found over 5 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=PWY-7840&oldid=21665"