Difference between revisions of "PWY-7003"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12184 RXN-12184] == * direction: ** LEFT-TO-RIGHT * common name: ** long-chain-fatty-acid-CoA l...")
 
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12184 RXN-12184] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7003 PWY-7003] ==
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* direction:
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** LEFT-TO-RIGHT
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* common name:
 
* common name:
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** long-chain-fatty-acid-CoA ligase
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** glycerol degradation to butanol
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* ec number:
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* taxonomic range:
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** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''8''' reactions found over '''10''' reactions in the full pathway
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** 1 [[ATP]][c] '''+''' 1 [[CPD-17637]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[CPD-17638]][c] '''+''' 1 [[AMP]][c]
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* [[2PGADEHYDRAT-RXN]]
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* With common name(s):
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** 5 associated gene(s):
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** 1 ATP[c] '''+''' 1 7-hydroxylaurate[c] '''+''' 1 coenzyme A[c] '''=>''' 1 diphosphate[c] '''+''' 1 7-hydroxylauroyl-CoA[c] '''+''' 1 AMP[c]
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*** [[CHC_T00008696001]]
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*** [[CHC_T00008696001_1]]
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== Genes associated with this reaction  ==
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*** [[CHC_T00009127001_1]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[CHC_T00008490001]]
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* [[CHC_T00008811001_1]]
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*** [[CHC_T00009127001]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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** 4 reconstruction source(s) associated:
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* [[CHC_T00008811001]]
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*** [[orthology-galdieria.sulphuraria]]
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** ORIGINAL_GENOME
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*** [[annotation-original_genome]]
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***AUTOMATED-NAME-MATCH
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*** [[orthology-arabidopsis_thaliana]]
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* [[CHC_T00009428001_1]]
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*** [[orthology-ectocarpus_siliculosus]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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* [[3PGAREARR-RXN]]
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* [[CHC_T00009428001]]
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** 6 associated gene(s):
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** ORIGINAL_GENOME
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*** [[CHC_T00001519001_1]]
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***AUTOMATED-NAME-MATCH
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*** [[CHC_T00004490001_1]]
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* [[CHC_T00008500001_1]]
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*** [[CHC_T00004201001_1]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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*** [[CHC_T00007707001_1]]
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* [[CHC_T00008160001_1]]
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*** [[CHC_T00000449001_1]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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*** [[CHC_T00001241001_1]]
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== Pathways  ==
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** 3 reconstruction source(s) associated:
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* [[PWY-6733]], sporopollenin precursors biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6733 PWY-6733]
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*** [[orthology-galdieria.sulphuraria]]
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** '''4''' reactions found over '''18''' reactions in the full pathway
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*** [[orthology-arabidopsis_thaliana]]
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== Reconstruction information  ==
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*** [[orthology-ectocarpus_siliculosus]]
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* [[orthology]]:
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* [[GAPOXNPHOSPHN-RXN]]
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** [[pantograph]]:
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** 2 associated gene(s):
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*** [[galdieria.sulphuraria]]
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*** [[CHC_T00009438001_1]]
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* [[annotation]]:
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*** [[CHC_T00009523001_1]]
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** [[pathwaytools]]:
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** 3 reconstruction source(s) associated:
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*** [[original_genome]]
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*** [[orthology-galdieria.sulphuraria]]
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*** [[orthology-arabidopsis_thaliana]]
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*** [[orthology-ectocarpus_siliculosus]]
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* [[PEPDEPHOS-RXN]]
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** 6 associated gene(s):
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*** [[CHC_T00008530001]]
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*** [[CHC_T00008652001]]
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*** [[CHC_T00008652001_1]]
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*** [[CHC_T00008482001_1]]
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*** [[CHC_T00008482001]]
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*** [[CHC_T00008530001_1]]
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** 4 reconstruction source(s) associated:
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*** [[orthology-galdieria.sulphuraria]]
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*** [[annotation-original_genome]]
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*** [[orthology-arabidopsis_thaliana]]
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*** [[orthology-ectocarpus_siliculosus]]
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* [[PHOSGLYPHOS-RXN]]
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** 3 associated gene(s):
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*** [[CHC_T00004105001_1]]
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*** [[CHC_T00009179001]]
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*** [[CHC_T00009179001_1]]
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** 4 reconstruction source(s) associated:
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*** [[orthology-galdieria.sulphuraria]]
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*** [[annotation-original_genome]]
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*** [[orthology-arabidopsis_thaliana]]
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*** [[orthology-ectocarpus_siliculosus]]
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* [[PWY-6131]]
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** 0 associated gene:
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* [[PWY-6583]]
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** 0 associated gene:
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* [[TRIOSEPISOMERIZATION-RXN]]
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** 5 associated gene(s):
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*** [[CHC_T00009126001_1]]
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*** [[CHC_T00009523001_1]]
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*** [[CHC_T00009126001]]
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*** [[CHC_T00009545001]]
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*** [[CHC_T00009545001_1]]
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** 4 reconstruction source(s) associated:
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*** [[orthology-galdieria.sulphuraria]]
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*** [[annotation-original_genome]]
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*** [[orthology-arabidopsis_thaliana]]
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*** [[orthology-ectocarpus_siliculosus]]
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== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=glycerol degradation to butanol}}
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{{#set: common name=long-chain-fatty-acid-CoA ligase}}
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{{#set: taxonomic range=TAX-2}}
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{{#set: ec number=EC-6.2.1.3}}
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{{#set: reaction found=8}}
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{{#set: gene associated=CHC_T00008811001_1|CHC_T00008811001|CHC_T00009428001_1|CHC_T00009428001|CHC_T00008500001_1|CHC_T00008160001_1}}
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{{#set: total reaction=10}}
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{{#set: in pathway=PWY-6733}}
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{{#set: completion rate=80.0}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=galdieria.sulphuraria}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=original_genome}}
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Latest revision as of 17:26, 9 January 2019

Pathway PWY-7003

  • common name:
    • glycerol degradation to butanol
  • taxonomic range:
  • Synonym(s):

Reaction(s) found

8 reactions found over 10 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=PWY-7003&oldid=21752"