Difference between revisions of "PWY-6519"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=6PGLUCONOLACT-RXN 6PGLUCONOLACT-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzym...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=6PGLUCONOLACT-RXN 6PGLUCONOLACT-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6519 PWY-6519] ==
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* direction:
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* common name:
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** LEFT-TO-RIGHT
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** 8-amino-7-oxononanoate biosynthesis I
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* ec number:
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* taxonomic range:
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** [http://enzyme.expasy.org/EC/3.1.1.31 EC-3.1.1.31]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* Synonym(s):
 
* Synonym(s):
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** 7-keto-8-aminopelargonate biosynthesis I
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''7''' reactions found over '''11''' reactions in the full pathway
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** 1 [[D-6-P-GLUCONO-DELTA-LACTONE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-2961]][c] '''+''' 1 [[PROTON]][c]
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* [[RXN-11474]]
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* With common name(s):
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** 2 associated gene(s):
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** 1 6-phospho D-glucono-1,5-lactone[c] '''+''' 1 H2O[c] '''=>''' 1 D-gluconate 6-phosphate[c] '''+''' 1 H+[c]
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*** [[CHC_T00009465001]]
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*** [[CHC_T00009465001_1]]
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== Genes associated with this reaction  ==
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** 2 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-original_genome]]
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* [[CHC_T00000675001_1]]
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*** [[orthology-ectocarpus_siliculosus]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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* [[RXN-11476]]
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** [[pantograph]]-[[a.taliana]]
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** 4 associated gene(s):
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** [[pantograph]]-[[a.taliana]]
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*** [[CHC_T00008496001]]
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== Pathways  ==
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*** [[CHC_T00008517001_1]]
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* [[P122-PWY]], heterolactic fermentation: [http://metacyc.org/META/NEW-IMAGE?object=P122-PWY P122-PWY]
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*** [[CHC_T00008557001]]
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** '''15''' reactions found over '''18''' reactions in the full pathway
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*** [[CHC_T00008477001]]
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* [[RUMP-PWY]], formaldehyde oxidation I: [http://metacyc.org/META/NEW-IMAGE?object=RUMP-PWY RUMP-PWY]
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** 3 reconstruction source(s) associated:
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** '''3''' reactions found over '''6''' reactions in the full pathway
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*** [[orthology-galdieria.sulphuraria]]
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* [[OXIDATIVEPENT-PWY]], pentose phosphate pathway (oxidative branch) I: [http://metacyc.org/META/NEW-IMAGE?object=OXIDATIVEPENT-PWY OXIDATIVEPENT-PWY]
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*** [[annotation-original_genome]]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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*** [[orthology-ectocarpus_siliculosus]]
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* [[GLYCOLYSIS-E-D]], superpathway of glycolysis and Entner-Doudoroff: [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS-E-D GLYCOLYSIS-E-D]
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* [[RXN-11478]]
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** '''3''' reactions found over '''6''' reactions in the full pathway
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** 1 associated gene(s):
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== Reconstruction information  ==
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*** [[CHC_T00009325001_1]]
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* [[orthology]]:
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** 2 reconstruction source(s) associated:
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** [[pantograph]]:
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*** [[orthology-galdieria.sulphuraria]]
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*** [[galdieria.sulphuraria]]
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*** [[orthology-ectocarpus_siliculosus]]
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*** [[a.taliana]]
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* [[RXN-11479]]
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* [[annotation]]:
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** 2 associated gene(s):
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** [[pathwaytools]]:
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*** [[CHC_T00009465001]]
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*** [[original_genome]]
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*** [[CHC_T00009465001_1]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-original_genome]]
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*** [[orthology-ectocarpus_siliculosus]]
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* [[RXN-11480]]
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** 4 associated gene(s):
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*** [[CHC_T00008517001_1]]
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*** [[CHC_T00008477001]]
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*** [[CHC_T00008496001]]
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*** [[CHC_T00008557001]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-galdieria.sulphuraria]]
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*** [[annotation-original_genome]]
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*** [[orthology-ectocarpus_siliculosus]]
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* [[RXN-11482]]
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** 1 associated gene(s):
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*** [[CHC_T00009325001_1]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-galdieria.sulphuraria]]
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*** [[orthology-ectocarpus_siliculosus]]
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* [[RXN-11484]]
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** 2 associated gene(s):
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*** [[CHC_T00004096001_1]]
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*** [[CHC_T00004094001_1]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-galdieria.sulphuraria]]
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*** [[orthology-ectocarpus_siliculosus]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11475 RXN-11475]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11477 RXN-11477]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11481 RXN-11481]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11483 RXN-11483]
 
== External links  ==
 
== External links  ==
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* RHEA:
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* ECOCYC:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12556 12556]
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PWY-6519 PWY-6519]
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* LIGAND-RXN:
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{{#set: common name=8-amino-7-oxononanoate biosynthesis I}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02035 R02035]
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{{#set: taxonomic range=TAX-2}}
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* UNIPROT:
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{{#set: common name=7-keto-8-aminopelargonate biosynthesis I}}
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** [http://www.uniprot.org/uniprot/P63337 P63337]
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{{#set: reaction found=7}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: total reaction=11}}
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{{#set: ec number=EC-3.1.1.31}}
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{{#set: completion rate=64.0}}
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{{#set: gene associated=CHC_T00000675001_1}}
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{{#set: in pathway=P122-PWY|RUMP-PWY|OXIDATIVEPENT-PWY|GLYCOLYSIS-E-D}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=galdieria.sulphuraria|a.taliana}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=original_genome}}
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Latest revision as of 16:31, 9 January 2019

Pathway PWY-6519

  • common name:
    • 8-amino-7-oxononanoate biosynthesis I
  • taxonomic range:
  • Synonym(s):
    • 7-keto-8-aminopelargonate biosynthesis I

Reaction(s) found

7 reactions found over 11 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=PWY-6519&oldid=21875"