Difference between revisions of "PEPDEPHOS-RXN"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7344 PWY-7344] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-27...")
 
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7344 PWY-7344] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PEPDEPHOS-RXN PEPDEPHOS-RXN] ==
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* taxonomic range:
+
* direction:
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
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** REVERSIBLE
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
+
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
+
 
* common name:
 
* common name:
−
** UDP-D-galactose biosynthesis
+
** pyruvate kinase I
 +
** pyruvate kinase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/2.7.1.40 EC-2.7.1.40]
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction(s) found ==
+
== Reaction Formula ==
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* '''1''' reaction(s) found
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* With identifiers:
−
** [[UDPGLUCEPIM-RXN]]
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** 1 [[ATP]][c] '''+''' 1 [[PYRUVATE]][c] '''<=>''' 1 [[PHOSPHO-ENOL-PYRUVATE]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c]
−
== Reaction(s) not found ==
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* With common name(s):
−
* '''0''' reaction(s) not found
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** 1 ATP[c] '''+''' 1 pyruvate[c] '''<=>''' 1 phosphoenolpyruvate[c] '''+''' 1 ADP[c] '''+''' 1 H+[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[CHC_T00008530001]]
 +
** Source: [[annotation-original_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[CHC_T00008652001]]
 +
** Source: [[annotation-original_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[CHC_T00008652001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
** Source: [[orthology-arabidopsis_thaliana]]
 +
** Source: [[orthology-arabidopsis_thaliana]]
 +
* Gene: [[CHC_T00008482001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
** Source: [[orthology-arabidopsis_thaliana]]
 +
** Source: [[orthology-arabidopsis_thaliana]]
 +
* Gene: [[CHC_T00008482001]]
 +
** Source: [[annotation-original_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[CHC_T00008530001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
== Pathways  ==
 +
* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS GLYCOLYSIS]
 +
** '''12''' reactions found over '''12''' reactions in the full pathway
 +
* [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY]
 +
** '''11''' reactions found over '''15''' reactions in the full pathway
 +
* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6142 PWY-6142]
 +
** '''10''' reactions found over '''15''' reactions in the full pathway
 +
* [[PWY-5484]], glycolysis II (from fructose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5484 PWY-5484]
 +
** '''11''' reactions found over '''11''' reactions in the full pathway
 +
* [[P122-PWY]], heterolactic fermentation: [http://metacyc.org/META/NEW-IMAGE?object=P122-PWY P122-PWY]
 +
** '''15''' reactions found over '''18''' reactions in the full pathway
 +
* [[PWY-7383]], anaerobic energy metabolism (invertebrates, cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7383 PWY-7383]
 +
** '''3''' reactions found over '''7''' reactions in the full pathway
 +
* [[FERMENTATION-PWY]], mixed acid fermentation: [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY]
 +
** '''11''' reactions found over '''16''' reactions in the full pathway
 +
* [[NPGLUCAT-PWY]], Entner-Doudoroff pathway II (non-phosphorylative): [http://metacyc.org/META/NEW-IMAGE?object=NPGLUCAT-PWY NPGLUCAT-PWY]
 +
** '''3''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7003]], glycerol degradation to butanol: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7003 PWY-7003]
 +
** '''8''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-1042]], glycolysis IV (plant cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1042 PWY-1042]
 +
** '''9''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-6901]], superpathway of glucose and xylose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6901 PWY-6901]
 +
** '''9''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723]
 +
** '''10''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-7218]], photosynthetic 3-hydroxybutanoate biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7218 PWY-7218]
 +
** '''7''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-2221]], Entner-Doudoroff pathway III (semi-phosphorylative): [http://metacyc.org/META/NEW-IMAGE?object=PWY-2221 PWY-2221]
 +
** '''4''' reactions found over '''9''' reactions in the full pathway
 +
* [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose): [http://metacyc.org/META/NEW-IMAGE?object=ANAGLYCOLYSIS-PWY ANAGLYCOLYSIS-PWY]
 +
** '''10''' reactions found over '''10''' reactions in the full pathway
 +
* [[P341-PWY]], glycolysis V (Pyrococcus): [http://metacyc.org/META/NEW-IMAGE?object=P341-PWY P341-PWY]
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6886]], 1-butanol autotrophic biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6886 PWY-6886]
 +
** '''8''' reactions found over '''11''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-arabidopsis_thaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-original_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* ECOCYC:
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* RHEA:
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PWY-7344 PWY-7344]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18157 18157]
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{{#set: taxonomic range=TAX-2759}}
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* UNIPROT:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.uniprot.org/uniprot/Q7M034 Q7M034]
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{{#set: taxonomic range=TAX-2157}}
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** [http://www.uniprot.org/uniprot/P11979 P11979]
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{{#set: common name=UDP-D-galactose biosynthesis}}
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** [http://www.uniprot.org/uniprot/P11980 P11980]
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{{#set: reaction found=1}}
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** [http://www.uniprot.org/uniprot/Q07637 Q07637]
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{{#set: reaction not found=0}}
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** [http://www.uniprot.org/uniprot/P34038 P34038]
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** [http://www.uniprot.org/uniprot/P43924 P43924]
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** [http://www.uniprot.org/uniprot/Q57572 Q57572]
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** [http://www.uniprot.org/uniprot/P0AD61 P0AD61]
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** [http://www.uniprot.org/uniprot/P19680 P19680]
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** [http://www.uniprot.org/uniprot/Q9PIB0 Q9PIB0]
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** [http://www.uniprot.org/uniprot/P80885 P80885]
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** [http://www.uniprot.org/uniprot/Q9UYU6 Q9UYU6]
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** [http://www.uniprot.org/uniprot/Q9JWX8 Q9JWX8]
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** [http://www.uniprot.org/uniprot/P47458 P47458]
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** [http://www.uniprot.org/uniprot/Q46078 Q46078]
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** [http://www.uniprot.org/uniprot/P30614 P30614]
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** [http://www.uniprot.org/uniprot/P22200 P22200]
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** [http://www.uniprot.org/uniprot/Q27788 Q27788]
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** [http://www.uniprot.org/uniprot/P51182 P51182]
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** [http://www.uniprot.org/uniprot/P51181 P51181]
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** [http://www.uniprot.org/uniprot/P31865 P31865]
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** [http://www.uniprot.org/uniprot/P00549 P00549]
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** [http://www.uniprot.org/uniprot/P00548 P00548]
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** [http://www.uniprot.org/uniprot/P30613 P30613]
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** [http://www.uniprot.org/uniprot/O75758 O75758]
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** [http://www.uniprot.org/uniprot/P12928 P12928]
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** [http://www.uniprot.org/uniprot/O30853 O30853]
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** [http://www.uniprot.org/uniprot/P30615 P30615]
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** [http://www.uniprot.org/uniprot/P30616 P30616]
 +
** [http://www.uniprot.org/uniprot/Q02499 Q02499]
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** [http://www.uniprot.org/uniprot/P22360 P22360]
 +
** [http://www.uniprot.org/uniprot/P21599 P21599]
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** [http://www.uniprot.org/uniprot/P14618 P14618]
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** [http://www.uniprot.org/uniprot/Q42954 Q42954]
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** [http://www.uniprot.org/uniprot/Q40545 Q40545]
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** [http://www.uniprot.org/uniprot/P52480 P52480]
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** [http://www.uniprot.org/uniprot/P52489 P52489]
 +
** [http://www.uniprot.org/uniprot/P78031 P78031]
 +
** [http://www.uniprot.org/uniprot/Q55863 Q55863]
 +
** [http://www.uniprot.org/uniprot/P73534 P73534]
 +
** [http://www.uniprot.org/uniprot/O65595 O65595]
 +
** [http://www.uniprot.org/uniprot/Q42806 Q42806]
 +
** [http://www.uniprot.org/uniprot/Q43117 Q43117]
 +
** [http://www.uniprot.org/uniprot/Q10208 Q10208]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00200 R00200]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=pyruvate kinase I}}
 +
{{#set: common name=pyruvate kinase}}
 +
{{#set: ec number=EC-2.7.1.40}}
 +
{{#set: gene associated=CHC_T00008530001|CHC_T00008652001|CHC_T00008652001_1|CHC_T00008482001_1|CHC_T00008482001|CHC_T00008530001_1}}
 +
{{#set: in pathway=GLYCOLYSIS|P124-PWY|PWY-6142|PWY-5484|P122-PWY|PWY-7383|FERMENTATION-PWY|NPGLUCAT-PWY|PWY-7003|PWY-1042|PWY-6901|PWY-5723|PWY-7218|PWY-2221|ANAGLYCOLYSIS-PWY|P341-PWY|PWY-6886}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=orthology-galdieria.sulphuraria|annotation-original_genome|orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 16:43, 9 January 2019

Reaction PEPDEPHOS-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • pyruvate kinase I
    • pyruvate kinase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • GLYCOLYSIS, glycolysis I (from glucose 6-phosphate): GLYCOLYSIS
    • 12 reactions found over 12 reactions in the full pathway
  • P124-PWY, Bifidobacterium shunt: P124-PWY
    • 11 reactions found over 15 reactions in the full pathway
  • PWY-6142, gluconeogenesis II (Methanobacterium thermoautotrophicum): PWY-6142
    • 10 reactions found over 15 reactions in the full pathway
  • PWY-5484, glycolysis II (from fructose 6-phosphate): PWY-5484
    • 11 reactions found over 11 reactions in the full pathway
  • P122-PWY, heterolactic fermentation: P122-PWY
    • 15 reactions found over 18 reactions in the full pathway
  • PWY-7383, anaerobic energy metabolism (invertebrates, cytosol): PWY-7383
    • 3 reactions found over 7 reactions in the full pathway
  • FERMENTATION-PWY, mixed acid fermentation: FERMENTATION-PWY
    • 11 reactions found over 16 reactions in the full pathway
  • NPGLUCAT-PWY, Entner-Doudoroff pathway II (non-phosphorylative): NPGLUCAT-PWY
    • 3 reactions found over 9 reactions in the full pathway
  • PWY-7003, glycerol degradation to butanol: PWY-7003
    • 8 reactions found over 10 reactions in the full pathway
  • PWY-1042, glycolysis IV (plant cytosol): PWY-1042
    • 9 reactions found over 10 reactions in the full pathway
  • PWY-6901, superpathway of glucose and xylose degradation: PWY-6901
    • 9 reactions found over 12 reactions in the full pathway
  • PWY-5723, Rubisco shunt: PWY-5723
    • 10 reactions found over 10 reactions in the full pathway
  • PWY-7218, photosynthetic 3-hydroxybutanoate biosynthesis (engineered): PWY-7218
    • 7 reactions found over 10 reactions in the full pathway
  • PWY-2221, Entner-Doudoroff pathway III (semi-phosphorylative): PWY-2221
    • 4 reactions found over 9 reactions in the full pathway
  • ANAGLYCOLYSIS-PWY, glycolysis III (from glucose): ANAGLYCOLYSIS-PWY
    • 10 reactions found over 10 reactions in the full pathway
  • P341-PWY, glycolysis V (Pyrococcus): P341-PWY
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-6886, 1-butanol autotrophic biosynthesis (engineered): PWY-6886
    • 8 reactions found over 11 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=PEPDEPHOS-RXN&oldid=22159"