Difference between revisions of "IGPSYN-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=Holo-malonate-decarboxylases Holo-malonate-decarboxylases] == * common name: ** [a holo malonat...")
 
 
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=Holo-malonate-decarboxylases Holo-malonate-decarboxylases] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=IGPSYN-RXN IGPSYN-RXN] ==
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* direction:
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
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** [a holo malonate decarboxylase acyl-carrier-protein]
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** indole-3-glycerol phosphate synthase
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* ec number:
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** [http://enzyme.expasy.org/EC/4.1.1.48 EC-4.1.1.48]
 
* Synonym(s):
 
* Synonym(s):
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** a malonate decarboxylase (thiol form)
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[RXN-9728]]
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[PROTON]][c] '''+''' 1 [[CARBOXYPHENYLAMINO-DEOXYRIBULOSE-P]][c] '''=>''' 1 [[INDOLE-3-GLYCEROL-P]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
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** 1 H+[c] '''+''' 1 1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate[c] '''=>''' 1 (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate[c] '''+''' 1 H2O[c] '''+''' 1 CO2[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[CHC_T00000220001_1]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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* Gene: [[CHC_T00004489001_1]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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* Gene: [[CHC_T00008561001]]
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** Source: [[annotation-original_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[CHC_T00008561001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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** Source: [[orthology-arabidopsis_thaliana]]
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== Pathways  ==
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* [[TRPSYN-PWY]], L-tryptophan biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=TRPSYN-PWY TRPSYN-PWY]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-galdieria.sulphuraria]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-arabidopsis_thaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-original_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: common name=[a holo malonate decarboxylase acyl-carrier-protein]}}
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* RHEA:
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{{#set: common name=a malonate decarboxylase (thiol form)}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23476 23476]
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{{#set: consumed by=RXN-9728}}
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P42393 P42393]
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** [http://www.uniprot.org/uniprot/P20577 P20577]
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** [http://www.uniprot.org/uniprot/P18304 P18304]
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** [http://www.uniprot.org/uniprot/Q06121 Q06121]
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** [http://www.uniprot.org/uniprot/Q9V1G3 Q9V1G3]
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** [http://www.uniprot.org/uniprot/P20578 P20578]
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** [http://www.uniprot.org/uniprot/Q9PI11 Q9PI11]
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** [http://www.uniprot.org/uniprot/Q58328 Q58328]
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** [http://www.uniprot.org/uniprot/Q9JSN4 Q9JSN4]
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** [http://www.uniprot.org/uniprot/P03964 P03964]
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** [http://www.uniprot.org/uniprot/P00910 P00910]
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** [http://www.uniprot.org/uniprot/P00909 P00909]
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** [http://www.uniprot.org/uniprot/P00911 P00911]
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** [http://www.uniprot.org/uniprot/P17217 P17217]
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** [http://www.uniprot.org/uniprot/P20409 P20409]
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** [http://www.uniprot.org/uniprot/P00937 P00937]
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** [http://www.uniprot.org/uniprot/P00908 P00908]
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** [http://www.uniprot.org/uniprot/P05328 P05328]
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** [http://www.uniprot.org/uniprot/P06531 P06531]
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** [http://www.uniprot.org/uniprot/P18483 P18483]
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** [http://www.uniprot.org/uniprot/P25170 P25170]
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** [http://www.uniprot.org/uniprot/P26938 P26938]
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** [http://www.uniprot.org/uniprot/P24773 P24773]
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** [http://www.uniprot.org/uniprot/Q01999 Q01999]
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** [http://www.uniprot.org/uniprot/Q9YGB5 Q9YGB5]
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** [http://www.uniprot.org/uniprot/Q9S591 Q9S591]
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** [http://www.uniprot.org/uniprot/Q9X7C7 Q9X7C7]
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** [http://www.uniprot.org/uniprot/Q92370 Q92370]
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** [http://www.uniprot.org/uniprot/Q9ZFA7 Q9ZFA7]
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** [http://www.uniprot.org/uniprot/P94327 P94327]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R03508 R03508]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=indole-3-glycerol phosphate synthase}}
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{{#set: ec number=EC-4.1.1.48}}
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{{#set: gene associated=CHC_T00000220001_1|CHC_T00004489001_1|CHC_T00008561001|CHC_T00008561001_1}}
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{{#set: in pathway=TRPSYN-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=orthology-galdieria.sulphuraria|annotation-original_genome|orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 16:45, 9 January 2019

Reaction IGPSYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • indole-3-glycerol phosphate synthase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • TRPSYN-PWY, L-tryptophan biosynthesis: TRPSYN-PWY
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=IGPSYN-RXN&oldid=22211"