Difference between revisions of "DIAMINOPIMDECARB-RXN"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIAMINOPIMDECARB-RXN DIAMINOPIMDECARB-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** diami...") |
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** Source: [[orthology-arabidopsis_thaliana]] | ** Source: [[orthology-arabidopsis_thaliana]] | ||
== Pathways == | == Pathways == | ||
| − | |||
| − | |||
* [[PWY-2942]], L-lysine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2942 PWY-2942] | * [[PWY-2942]], L-lysine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2942 PWY-2942] | ||
** '''5''' reactions found over '''7''' reactions in the full pathway | ** '''5''' reactions found over '''7''' reactions in the full pathway | ||
| Line 36: | Line 34: | ||
* [[PWY-2941]], L-lysine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2941 PWY-2941] | * [[PWY-2941]], L-lysine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2941 PWY-2941] | ||
** '''6''' reactions found over '''9''' reactions in the full pathway | ** '''6''' reactions found over '''9''' reactions in the full pathway | ||
| + | * [[PWY-5097]], L-lysine biosynthesis VI: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5097 PWY-5097] | ||
| + | ** '''7''' reactions found over '''7''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* Category: [[orthology]] | * Category: [[orthology]] | ||
| + | ** Source: [[orthology-galdieria.sulphuraria]] | ||
| + | *** Tool: [[pantograph]] | ||
** Source: [[orthology-arabidopsis_thaliana]] | ** Source: [[orthology-arabidopsis_thaliana]] | ||
*** Tool: [[pantograph]] | *** Tool: [[pantograph]] | ||
** Source: [[orthology-ectocarpus_siliculosus]] | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
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| − | |||
*** Tool: [[pantograph]] | *** Tool: [[pantograph]] | ||
* Category: [[annotation]] | * Category: [[annotation]] | ||
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* RHEA: | * RHEA: | ||
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15101 15101] | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15101 15101] | ||
| − | |||
| − | |||
* UNIPROT: | * UNIPROT: | ||
** [http://www.uniprot.org/uniprot/P19572 P19572] | ** [http://www.uniprot.org/uniprot/P19572 P19572] | ||
| Line 70: | Line 68: | ||
** [http://www.uniprot.org/uniprot/Q55484 Q55484] | ** [http://www.uniprot.org/uniprot/Q55484 Q55484] | ||
** [http://www.uniprot.org/uniprot/O05321 O05321] | ** [http://www.uniprot.org/uniprot/O05321 O05321] | ||
| + | * LIGAND-RXN: | ||
| + | ** [http://www.genome.jp/dbget-bin/www_bget?R00451 R00451] | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
{{#set: common name=diaminopimelate decarboxylase}} | {{#set: common name=diaminopimelate decarboxylase}} | ||
{{#set: ec number=EC-4.1.1.20}} | {{#set: ec number=EC-4.1.1.20}} | ||
{{#set: gene associated=CHC_T00009352001|CHC_T00004243001_1|CHC_T00009352001_1}} | {{#set: gene associated=CHC_T00009352001|CHC_T00004243001_1|CHC_T00009352001_1}} | ||
| − | {{#set: in pathway= | + | {{#set: in pathway=PWY-2942|DAPLYSINESYN-PWY|PWY-2941|PWY-5097}} |
{{#set: reconstruction category=orthology|annotation}} | {{#set: reconstruction category=orthology|annotation}} | ||
| − | {{#set: reconstruction source=annotation-original_genome|orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus | + | {{#set: reconstruction source=orthology-galdieria.sulphuraria|annotation-original_genome|orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus}} |
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
Latest revision as of 16:50, 9 January 2019
Contents
Reaction DIAMINOPIMDECARB-RXN
- direction:
- LEFT-TO-RIGHT
- common name:
- diaminopimelate decarboxylase
- ec number:
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 MESO-DIAMINOPIMELATE[c] + 1 PROTON[c] => 1 LYS[c] + 1 CARBON-DIOXIDE[c]
- With common name(s):
- 1 meso-diaminopimelate[c] + 1 H+[c] => 1 L-lysine[c] + 1 CO2[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: CHC_T00009352001
- Source: annotation-original_genome
- Assignment: AUTOMATED-NAME-MATCH
- Source: annotation-original_genome
- Gene: CHC_T00004243001_1
- Source: orthology-galdieria.sulphuraria
- Source: orthology-ectocarpus_siliculosus
- Gene: CHC_T00009352001_1
- Source: orthology-galdieria.sulphuraria
- Source: orthology-ectocarpus_siliculosus
- Source: orthology-arabidopsis_thaliana
Pathways
- PWY-2942, L-lysine biosynthesis III: PWY-2942
- 5 reactions found over 7 reactions in the full pathway
- DAPLYSINESYN-PWY, L-lysine biosynthesis I: DAPLYSINESYN-PWY
- 6 reactions found over 9 reactions in the full pathway
- PWY-2941, L-lysine biosynthesis II: PWY-2941
- 6 reactions found over 9 reactions in the full pathway
- PWY-5097, L-lysine biosynthesis VI: PWY-5097
- 7 reactions found over 7 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-galdieria.sulphuraria
- Tool: pantograph
- Source: orthology-arabidopsis_thaliana
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-galdieria.sulphuraria
- Category: annotation
- Source: annotation-original_genome
- Tool: pathwaytools
- Source: annotation-original_genome
External links
- RHEA:
- UNIPROT:
- LIGAND-RXN:
