Difference between revisions of "DIAMINOPIMDECARB-RXN"
From metabolic_network
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− | [[Category: | + | [[Category:Reaction]] |
− | == | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIAMINOPIMDECARB-RXN DIAMINOPIMDECARB-RXN] == |
− | * | + | * direction: |
− | ** | + | ** LEFT-TO-RIGHT |
− | + | ||
* common name: | * common name: | ||
− | ** | + | ** diaminopimelate decarboxylase |
+ | * ec number: | ||
+ | ** [http://enzyme.expasy.org/EC/4.1.1.20 EC-4.1.1.20] | ||
* Synonym(s): | * Synonym(s): | ||
− | |||
− | == Reaction | + | == Reaction Formula == |
− | * '''1''' | + | * With identifiers: |
− | ** [[ | + | ** 1 [[MESO-DIAMINOPIMELATE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[LYS]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] |
− | == | + | * With common name(s): |
− | * ''' | + | ** 1 meso-diaminopimelate[c] '''+''' 1 H+[c] '''=>''' 1 L-lysine[c] '''+''' 1 CO2[c] |
− | * | + | |
− | ** [http://metacyc.org/META/NEW-IMAGE?object= | + | == Genes associated with this reaction == |
+ | Genes have been associated with this reaction based on different elements listed below. | ||
+ | * Gene: [[CHC_T00009352001]] | ||
+ | ** Source: [[annotation-original_genome]] | ||
+ | *** Assignment: AUTOMATED-NAME-MATCH | ||
+ | * Gene: [[CHC_T00004243001_1]] | ||
+ | ** Source: [[orthology-galdieria.sulphuraria]] | ||
+ | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
+ | * Gene: [[CHC_T00009352001_1]] | ||
+ | ** Source: [[orthology-galdieria.sulphuraria]] | ||
+ | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
+ | ** Source: [[orthology-arabidopsis_thaliana]] | ||
+ | == Pathways == | ||
+ | * [[PWY-2942]], L-lysine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2942 PWY-2942] | ||
+ | ** '''5''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[DAPLYSINESYN-PWY]], L-lysine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=DAPLYSINESYN-PWY DAPLYSINESYN-PWY] | ||
+ | ** '''6''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-2941]], L-lysine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2941 PWY-2941] | ||
+ | ** '''6''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-5097]], L-lysine biosynthesis VI: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5097 PWY-5097] | ||
+ | ** '''7''' reactions found over '''7''' reactions in the full pathway | ||
+ | == Reconstruction information == | ||
+ | * Category: [[orthology]] | ||
+ | ** Source: [[orthology-galdieria.sulphuraria]] | ||
+ | *** Tool: [[pantograph]] | ||
+ | ** Source: [[orthology-arabidopsis_thaliana]] | ||
+ | *** Tool: [[pantograph]] | ||
+ | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
+ | *** Tool: [[pantograph]] | ||
+ | * Category: [[annotation]] | ||
+ | ** Source: [[annotation-original_genome]] | ||
+ | *** Tool: [[pathwaytools]] | ||
== External links == | == External links == | ||
− | {{#set: | + | * RHEA: |
− | {{#set: | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15101 15101] |
− | {{#set: | + | * UNIPROT: |
− | {{#set: | + | ** [http://www.uniprot.org/uniprot/P19572 P19572] |
− | {{#set: | + | ** [http://www.uniprot.org/uniprot/P0A5M4 P0A5M4] |
− | {{#set: | + | ** [http://www.uniprot.org/uniprot/P44316 P44316] |
+ | ** [http://www.uniprot.org/uniprot/P56129 P56129] | ||
+ | ** [http://www.uniprot.org/uniprot/O67262 O67262] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JWA6 Q9JWA6] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CG26 Q9CG26] | ||
+ | ** [http://www.uniprot.org/uniprot/P00861 P00861] | ||
+ | ** [http://www.uniprot.org/uniprot/O27390 O27390] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PII5 Q9PII5] | ||
+ | ** [http://www.uniprot.org/uniprot/Q58497 Q58497] | ||
+ | ** [http://www.uniprot.org/uniprot/O29458 O29458] | ||
+ | ** [http://www.uniprot.org/uniprot/P41023 P41023] | ||
+ | ** [http://www.uniprot.org/uniprot/P23630 P23630] | ||
+ | ** [http://www.uniprot.org/uniprot/P09890 P09890] | ||
+ | ** [http://www.uniprot.org/uniprot/Q55484 Q55484] | ||
+ | ** [http://www.uniprot.org/uniprot/O05321 O05321] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R00451 R00451] | ||
+ | {{#set: direction=LEFT-TO-RIGHT}} | ||
+ | {{#set: common name=diaminopimelate decarboxylase}} | ||
+ | {{#set: ec number=EC-4.1.1.20}} | ||
+ | {{#set: gene associated=CHC_T00009352001|CHC_T00004243001_1|CHC_T00009352001_1}} | ||
+ | {{#set: in pathway=PWY-2942|DAPLYSINESYN-PWY|PWY-2941|PWY-5097}} | ||
+ | {{#set: reconstruction category=orthology|annotation}} | ||
+ | {{#set: reconstruction source=orthology-galdieria.sulphuraria|annotation-original_genome|orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus}} | ||
+ | {{#set: reconstruction tool=pantograph|pathwaytools}} |
Latest revision as of 16:50, 9 January 2019
Contents
Reaction DIAMINOPIMDECARB-RXN
- direction:
- LEFT-TO-RIGHT
- common name:
- diaminopimelate decarboxylase
- ec number:
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 MESO-DIAMINOPIMELATE[c] + 1 PROTON[c] => 1 LYS[c] + 1 CARBON-DIOXIDE[c]
- With common name(s):
- 1 meso-diaminopimelate[c] + 1 H+[c] => 1 L-lysine[c] + 1 CO2[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: CHC_T00009352001
- Source: annotation-original_genome
- Assignment: AUTOMATED-NAME-MATCH
- Source: annotation-original_genome
- Gene: CHC_T00004243001_1
- Source: orthology-galdieria.sulphuraria
- Source: orthology-ectocarpus_siliculosus
- Gene: CHC_T00009352001_1
- Source: orthology-galdieria.sulphuraria
- Source: orthology-ectocarpus_siliculosus
- Source: orthology-arabidopsis_thaliana
Pathways
- PWY-2942, L-lysine biosynthesis III: PWY-2942
- 5 reactions found over 7 reactions in the full pathway
- DAPLYSINESYN-PWY, L-lysine biosynthesis I: DAPLYSINESYN-PWY
- 6 reactions found over 9 reactions in the full pathway
- PWY-2941, L-lysine biosynthesis II: PWY-2941
- 6 reactions found over 9 reactions in the full pathway
- PWY-5097, L-lysine biosynthesis VI: PWY-5097
- 7 reactions found over 7 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-galdieria.sulphuraria
- Tool: pantograph
- Source: orthology-arabidopsis_thaliana
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-galdieria.sulphuraria
- Category: annotation
- Source: annotation-original_genome
- Tool: pathwaytools
- Source: annotation-original_genome
External links
- RHEA:
- UNIPROT:
- LIGAND-RXN: