Difference between revisions of "PWY-5129"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16165 RXN-16165] == * direction: ** LEFT-TO-RIGHT * common name: ** methionine--tRNA ligase, cy...")
 
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16165 RXN-16165] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5129 PWY-5129] ==
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* direction:
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** LEFT-TO-RIGHT
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* common name:
 
* common name:
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** methionine--tRNA ligase, cytoplasmic
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** sphingolipid biosynthesis (plants)
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* ec number:
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* taxonomic range:
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** [http://enzyme.expasy.org/EC/6.1.1.10 EC-6.1.1.10]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
 
* Synonym(s):
 
* Synonym(s):
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** ceramide biosynthesis (plants)
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''3''' reactions found over '''13''' reactions in the full pathway
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** 1 [[ATP]][c] '''+''' 1 [[MET]][c] '''+''' 1 [[Initiation-tRNAmet]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[L-methionyl-tRNAfmet]][c]
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* [[3-DEHYDROSPHINGANINE-REDUCTASE-RXN]]
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* With common name(s):
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** 2 associated gene(s):
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** 1 ATP[c] '''+''' 1 L-methionine[c] '''+''' 1 initiator tRNAmet[c] '''=>''' 1 diphosphate[c] '''+''' 1 AMP[c] '''+''' 1 an L-methionyl-[initiator tRNAmet][c]
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*** [[CHC_T00008374001_1]]
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*** [[CHC_T00008374001]]
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== Genes associated with this reaction  ==
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** 2 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-galdieria.sulphuraria]]
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* [[CHC_T00006241001_1]]
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*** [[annotation-original_genome]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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* [[RXN-7795]]
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* [[CHC_T00007020001_1]]
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** 1 associated gene(s):
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** [[pantograph]]-[[galdieria.sulphuraria]]
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*** [[CHC_T00008908001]]
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* [[CHC_T00009091001]]
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** 1 reconstruction source(s) associated:
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** ORIGINAL_GENOME
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*** [[annotation-original_genome]]
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***AUTOMATED-NAME-MATCH
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* [[SERINE-C-PALMITOYLTRANSFERASE-RXN]]
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* [[CHC_T00009091001_1]]
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** 4 associated gene(s):
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** [[pantograph]]-[[galdieria.sulphuraria]]
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*** [[CHC_T00008697001_1]]
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== Pathways  ==
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*** [[CHC_T00008326001]]
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* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
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*** [[CHC_T00008697001]]
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** '''21''' reactions found over '''21''' reactions in the full pathway
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*** [[CHC_T00008326001_1]]
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== Reconstruction information  ==
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** 4 reconstruction source(s) associated:
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* [[orthology]]:
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*** [[orthology-galdieria.sulphuraria]]
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** [[pantograph]]:
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*** [[annotation-original_genome]]
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*** [[galdieria.sulphuraria]]
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*** [[orthology-arabidopsis_thaliana]]
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* [[annotation]]:
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*** [[orthology-ectocarpus_siliculosus]]
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** [[pathwaytools]]:
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== Reaction(s) not found ==
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*** [[original_genome]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11341 RXN-11341]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-14250 RXN-14250]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7792 RXN-7792]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7793 RXN-7793]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7796 RXN-7796]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7798 RXN-7798]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7799 RXN-7799]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7801 RXN-7801]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN3O-1380 RXN3O-1380]
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* [http://metacyc.org/META/NEW-IMAGE?object=SPHINGANINE-KINASE-RXN SPHINGANINE-KINASE-RXN]
 
== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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* ARACYC:
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{{#set: common name=methionine--tRNA ligase, cytoplasmic}}
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** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-5129 PWY-5129]
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{{#set: ec number=EC-6.1.1.10}}
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{{#set: common name=sphingolipid biosynthesis (plants)}}
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{{#set: gene associated=CHC_T00006241001_1|CHC_T00007020001_1|CHC_T00009091001|CHC_T00009091001_1}}
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{{#set: taxonomic range=TAX-33090}}
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{{#set: in pathway=TRNA-CHARGING-PWY}}
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{{#set: common name=ceramide biosynthesis (plants)}}
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{{#set: reconstruction category=orthology}}
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{{#set: reaction found=3}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: total reaction=13}}
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{{#set: reconstruction source=galdieria.sulphuraria}}
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{{#set: completion rate=23.0}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=original_genome}}
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Latest revision as of 17:51, 9 January 2019

Pathway PWY-5129

  • common name:
    • sphingolipid biosynthesis (plants)
  • taxonomic range:
  • Synonym(s):
    • ceramide biosynthesis (plants)

Reaction(s) found

3 reactions found over 13 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=PWY-5129&oldid=22366"