Difference between revisions of "FPPSYN-RXN"

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(Created page with "Category:Gene == Gene CHC_T00008526001 == * left end position: ** 210747 * transcription direction: ** NEGATIVE * right end position: ** 212363 * centisome position: ** 69...")
 
 
(2 intermediate revisions by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene CHC_T00008526001 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=FPPSYN-RXN FPPSYN-RXN] ==
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* left end position:
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* direction:
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** 210747
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** LEFT-TO-RIGHT
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* transcription direction:
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* ec number:
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** NEGATIVE
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** [http://enzyme.expasy.org/EC/2.5.1.10 EC-2.5.1.10]
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* right end position:
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** 212363
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* centisome position:
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** 69.77176   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[1-ACYLGLYCEROL-3-P-ACYLTRANSFER-RXN]]
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* With identifiers:
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** original_genome
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** 1 [[DELTA3-ISOPENTENYL-PP]][c] '''+''' 1 [[GERANYL-PP]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[FARNESYL-PP]][c]
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***automated-name-match
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* With common name(s):
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* [[RXN-15043]]
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** 1 isopentenyl diphosphate[c] '''+''' 1 geranyl diphosphate[c] '''=>''' 1 diphosphate[c] '''+''' 1 (2E,6E)-farnesyl diphosphate[c]
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** original_genome
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***automated-name-match
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== Genes associated with this reaction  ==
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* [[RXN-16025]]
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Genes have been associated with this reaction based on different elements listed below.
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** original_genome
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* Gene: [[CHC_T00008265001_1]]
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***automated-name-match
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** Source: [[orthology-ectocarpus_siliculosus]]
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* [[RXN-16032]]
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* Gene: [[CHC_T00002324001_1]]
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** original_genome
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** Source: [[orthology-galdieria.sulphuraria]]
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***automated-name-match
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** Source: [[orthology-ectocarpus_siliculosus]]
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* [[RXN-16066]]
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* Gene: [[CHC_T00006851001_1]]
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** original_genome
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** Source: [[orthology-ectocarpus_siliculosus]]
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***automated-name-match
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** Source: [[orthology-arabidopsis_thaliana]]
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* [[RXN-16067]]
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== Pathways  ==
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** original_genome
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* [[PWY-5123]], trans, trans-farnesyl diphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5123 PWY-5123]
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***automated-name-match
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[RXN-16076]]
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* [[PWY-6859]], all-trans-farnesol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6859 PWY-6859]
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** original_genome
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** '''3''' reactions found over '''4''' reactions in the full pathway
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***automated-name-match
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* [[PWY-7102]], bisabolene biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7102 PWY-7102]
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* [[RXN-16077]]
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** '''3''' reactions found over '''6''' reactions in the full pathway
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** original_genome
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* [[PWY-7736]], stellatic acid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7736 PWY-7736]
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***automated-name-match
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** '''3''' reactions found over '''8''' reactions in the full pathway
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* [[RXN-16118]]
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* [[PWY-7721]], methyl phomopsenoate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7721 PWY-7721]
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** original_genome
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** '''2''' reactions found over '''4''' reactions in the full pathway
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***automated-name-match
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== Reconstruction information  ==
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* [[RXN-1623]]
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* Category: [[orthology]]
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** original_genome
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** Source: [[orthology-galdieria.sulphuraria]]
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***automated-name-match
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*** Tool: [[pantograph]]
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* [[RXN-17008]]
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** Source: [[orthology-arabidopsis_thaliana]]
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** original_genome
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*** Tool: [[pantograph]]
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***automated-name-match
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** Source: [[orthology-ectocarpus_siliculosus]]
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* [[RXN-17009]]
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*** Tool: [[pantograph]]
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** original_genome
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−
***automated-name-match
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* [[RXN-17010]]
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** original_genome
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−
***automated-name-match
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* [[RXN-17011]]
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** original_genome
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***automated-name-match
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* [[RXN-17012]]
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** original_genome
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−
***automated-name-match
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* [[RXN-17013]]
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** original_genome
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***automated-name-match
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* [[RXN-17014]]
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** original_genome
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***automated-name-match
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* [[RXN-17015]]
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** original_genome
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***automated-name-match
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* [[RXN-17019]]
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** original_genome
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***automated-name-match
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* [[RXN-17020]]
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** original_genome
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***automated-name-match
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* [[RXN-17021]]
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** original_genome
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***automated-name-match
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* [[RXN-17022]]
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** original_genome
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***automated-name-match
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* [[RXN-17023]]
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** original_genome
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***automated-name-match
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* [[RXN-17024]]
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** original_genome
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***automated-name-match
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* [[RXN-17729]]
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** original_genome
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***automated-name-match
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* [[RXN0-5514]]
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** original_genome
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***automated-name-match
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* [[RXN0-6705]]
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** original_genome
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***automated-name-match
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== Pathways associated ==
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* [[TRIGLSYN-PWY]]
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* [[PWY-7411]]
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* [[PWY-7589]]
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* [[PWY-7782]]
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* [[PWY-5667]]
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* [[PWY0-1319]]
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* [[PWY-7417]]
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* [[PWY-5981]]
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* [[PWY-7587]]
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* [[PWY-6453]]
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== External links  ==
 
== External links  ==
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{{#set: left end position=210747}}
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* RHEA:
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{{#set: transcription direction=NEGATIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19361 19361]
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{{#set: right end position=212363}}
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* UNIPROT:
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{{#set: centisome position=69.77176    }}
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** [http://www.uniprot.org/uniprot/P08524 P08524]
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{{#set: reaction associated=1-ACYLGLYCEROL-3-P-ACYLTRANSFER-RXN|RXN-15043|RXN-16025|RXN-16032|RXN-16066|RXN-16067|RXN-16076|RXN-16077|RXN-16118|RXN-1623|RXN-17008|RXN-17009|RXN-17010|RXN-17011|RXN-17012|RXN-17013|RXN-17014|RXN-17015|RXN-17019|RXN-17020|RXN-17021|RXN-17022|RXN-17023|RXN-17024|RXN-17729|RXN0-5514|RXN0-6705}}
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** [http://www.uniprot.org/uniprot/P05369 P05369]
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{{#set: pathway associated=TRIGLSYN-PWY|PWY-7411|PWY-7589|PWY-7782|PWY-5667|PWY0-1319|PWY-7417|PWY-5981|PWY-7587|PWY-6453}}
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** [http://www.uniprot.org/uniprot/P14324 P14324]
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** [http://www.uniprot.org/uniprot/Q9CH81 Q9CH81]
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** [http://www.uniprot.org/uniprot/Q9PM32 Q9PM32]
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** [http://www.uniprot.org/uniprot/P45204 P45204]
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** [http://www.uniprot.org/uniprot/Q9JSM0 Q9JSM0]
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** [http://www.uniprot.org/uniprot/P49350 P49350]
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** [http://www.uniprot.org/uniprot/P22939 P22939]
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** [http://www.uniprot.org/uniprot/Q08291 Q08291]
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** [http://www.uniprot.org/uniprot/P49349 P49349]
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** [http://www.uniprot.org/uniprot/Q09152 Q09152]
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** [http://www.uniprot.org/uniprot/P49351 P49351]
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** [http://www.uniprot.org/uniprot/P49352 P49352]
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** [http://www.uniprot.org/uniprot/Q43315 Q43315]
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** [http://www.uniprot.org/uniprot/O24241 O24241]
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** [http://www.uniprot.org/uniprot/O24242 O24242]
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** [http://www.uniprot.org/uniprot/Q92334 Q92334]
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** [http://www.uniprot.org/uniprot/Q92218 Q92218]
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** [http://www.uniprot.org/uniprot/Q92235 Q92235]
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** [http://www.uniprot.org/uniprot/Q92250 Q92250]
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** [http://www.uniprot.org/uniprot/Q8L7F4 Q8L7F4]
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** [http://www.uniprot.org/uniprot/P49353 P49353]
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** [http://www.uniprot.org/uniprot/O04882 O04882]
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** [http://www.uniprot.org/uniprot/O65004 O65004]
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** [http://www.uniprot.org/uniprot/O14230 O14230]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R02003 R02003]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: ec number=EC-2.5.1.10}}
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{{#set: gene associated=CHC_T00008265001_1|CHC_T00002324001_1|CHC_T00006851001_1}}
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{{#set: in pathway=PWY-5123|PWY-6859|PWY-7102|PWY-7736|PWY-7721}}
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{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-galdieria.sulphuraria|orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus}}
 +
{{#set: reconstruction tool=pantograph}}

Latest revision as of 17:51, 9 January 2019

Reaction FPPSYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 isopentenyl diphosphate[c] + 1 geranyl diphosphate[c] => 1 diphosphate[c] + 1 (2E,6E)-farnesyl diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5123, trans, trans-farnesyl diphosphate biosynthesis: PWY-5123
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-6859, all-trans-farnesol biosynthesis: PWY-6859
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-7102, bisabolene biosynthesis (engineered): PWY-7102
    • 3 reactions found over 6 reactions in the full pathway
  • PWY-7736, stellatic acid biosynthesis: PWY-7736
    • 3 reactions found over 8 reactions in the full pathway
  • PWY-7721, methyl phomopsenoate biosynthesis: PWY-7721
    • 2 reactions found over 4 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=FPPSYN-RXN&oldid=22381"