Difference between revisions of "PWY66-341"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11109 RXN-11109] == * direction: ** LEFT-TO-RIGHT * common name: ** DEAD box RNA helicase, puta...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11109 RXN-11109] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY66-341 PWY66-341] ==
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* direction:
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** LEFT-TO-RIGHT
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* common name:
 
* common name:
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** DEAD box RNA helicase, putative
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** cholesterol biosynthesis I
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* ec number:
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* taxonomic range:
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** [http://enzyme.expasy.org/EC/3.6.4.13 EC-3.6.4.13]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-33208]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''15''' reactions found over '''22''' reactions in the full pathway
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** 1 [[ATP]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[Wound-RNA]][c] '''=>''' 1 [[Unwound-RNA]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[ADP]][c]
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* [[1.14.21.6-RXN]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 ATP[c] '''+''' 1 H2O[c] '''+''' 1 wound RNA[c] '''=>''' 1 an unwound RNA[c] '''+''' 1 H+[c] '''+''' 1 phosphate[c] '''+''' 1 ADP[c]
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*** [[CHC_T00006481001_1]]
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** 2 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[orthology-galdieria.sulphuraria]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-ectocarpus_siliculosus]]
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* [[CHC_T00010014001_1]]
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* [[PWY-5670]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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** 0 associated gene:
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* [[CHC_T00010060001_1]]
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* [[RXN66-303]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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** 1 associated gene(s):
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* [[CHC_T00003761001_1]]
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*** [[CHC_T00009303001_1]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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** 2 reconstruction source(s) associated:
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* [[CHC_T00010236001]]
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*** [[orthology-galdieria.sulphuraria]]
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** ORIGINAL_GENOME
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*** [[orthology-ectocarpus_siliculosus]]
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***AUTOMATED-NAME-MATCH
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* [[RXN66-304]]
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* [[CHC_T00002773001_1]]
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** 1 associated gene(s):
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** [[pantograph]]-[[galdieria.sulphuraria]]
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*** [[CHC_T00009303001_1]]
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* [[CHC_T00006912001_1]]
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** 2 reconstruction source(s) associated:
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** [[pantograph]]-[[galdieria.sulphuraria]]
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*** [[orthology-galdieria.sulphuraria]]
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* [[CHC_T00010340001_1]]
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*** [[orthology-ectocarpus_siliculosus]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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* [[RXN66-305]]
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* [[CHC_T00005385001_1]]
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** 1 associated gene(s):
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** [[pantograph]]-[[galdieria.sulphuraria]]
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*** [[CHC_T00009303001_1]]
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* [[CHC_T00010308001_1]]
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** 2 reconstruction source(s) associated:
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** [[pantograph]]-[[galdieria.sulphuraria]]
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*** [[orthology-galdieria.sulphuraria]]
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* [[CHC_T00007274001_1]]
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*** [[orthology-ectocarpus_siliculosus]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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* [[RXN66-306]]
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* [[CHC_T00006787001_1]]
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** 1 associated gene(s):
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** [[pantograph]]-[[galdieria.sulphuraria]]
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*** [[CHC_T00003466001_1]]
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* [[CHC_T00000427001_1]]
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** 2 reconstruction source(s) associated:
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** [[pantograph]]-[[galdieria.sulphuraria]]
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*** [[orthology-galdieria.sulphuraria]]
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* [[CHC_T00010310001_1]]
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*** [[orthology-ectocarpus_siliculosus]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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* [[RXN66-310]]
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* [[CHC_T00008647001_1]]
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** 1 associated gene(s):
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** [[pantograph]]-[[galdieria.sulphuraria]]
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*** [[CHC_T00010320001_1]]
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* [[CHC_T00010142001]]
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** 1 reconstruction source(s) associated:
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** ORIGINAL_GENOME
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*** [[orthology-galdieria.sulphuraria]]
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***AUTOMATED-NAME-MATCH
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* [[RXN66-311]]
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* [[CHC_T00010115001_1]]
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** 1 associated gene(s):
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** [[pantograph]]-[[galdieria.sulphuraria]]
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*** [[CHC_T00010320001_1]]
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* [[CHC_T00002063001_1]]
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** 1 reconstruction source(s) associated:
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** [[pantograph]]-[[galdieria.sulphuraria]]
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*** [[orthology-galdieria.sulphuraria]]
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* [[CHC_T00010264001_1]]
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* [[RXN66-312]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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** 1 associated gene(s):
−
* [[CHC_T00010236001_1]]
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*** [[CHC_T00010320001_1]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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** 1 reconstruction source(s) associated:
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* [[CHC_T00004762001_1]]
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*** [[orthology-galdieria.sulphuraria]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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* [[RXN66-313]]
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* [[CHC_T00010215001_1]]
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** 1 associated gene(s):
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** [[pantograph]]-[[galdieria.sulphuraria]]
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*** [[CHC_T00003646001_1]]
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* [[CHC_T00008748001_1]]
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** 2 reconstruction source(s) associated:
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** [[pantograph]]-[[galdieria.sulphuraria]]
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*** [[orthology-galdieria.sulphuraria]]
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* [[CHC_T00010142001_1]]
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*** [[orthology-ectocarpus_siliculosus]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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* [[RXN66-315]]
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* [[CHC_T00010296001_1]]
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** 1 associated gene(s):
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** [[pantograph]]-[[galdieria.sulphuraria]]
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*** [[CHC_T00010320001_1]]
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* [[CHC_T00010233001_1]]
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** 1 reconstruction source(s) associated:
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** [[pantograph]]-[[galdieria.sulphuraria]]
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*** [[orthology-galdieria.sulphuraria]]
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* [[CHC_T00010240001_1]]
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* [[RXN66-316]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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** 1 associated gene(s):
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* [[CHC_T00004041001_1]]
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*** [[CHC_T00010320001_1]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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** 1 reconstruction source(s) associated:
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* [[CHC_T00009449001_1]]
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*** [[orthology-galdieria.sulphuraria]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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* [[RXN66-317]]
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* [[CHC_T00010189001_1]]
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** 1 associated gene(s):
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** [[pantograph]]-[[galdieria.sulphuraria]]
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*** [[CHC_T00010320001_1]]
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* [[CHC_T00010221001_1]]
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** 1 reconstruction source(s) associated:
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** [[pantograph]]-[[galdieria.sulphuraria]]
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*** [[orthology-galdieria.sulphuraria]]
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== Pathways  ==
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* [[RXN66-318]]
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== Reconstruction information  ==
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** 1 associated gene(s):
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* [[orthology]]:
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*** [[CHC_T00003646001_1]]
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** [[pantograph]]:
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** 2 reconstruction source(s) associated:
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*** [[galdieria.sulphuraria]]
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*** [[orthology-galdieria.sulphuraria]]
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* [[annotation]]:
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*** [[orthology-ectocarpus_siliculosus]]
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** [[pathwaytools]]:
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* [[RXN66-323]]
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*** [[original_genome]]
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** 1 associated gene(s):
 +
*** [[CHC_T00006493001_1]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-ectocarpus_siliculosus]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=PWY-6132 PWY-6132]
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* [http://metacyc.org/META/NEW-IMAGE?object=PWY-6132 PWY-6132]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN66-314 RXN66-314]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN66-319 RXN66-319]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN66-320 RXN66-320]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN66-321 RXN66-321]
 
== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=cholesterol biosynthesis I}}
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{{#set: common name=DEAD box RNA helicase, putative}}
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{{#set: taxonomic range=TAX-33208}}
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{{#set: ec number=EC-3.6.4.13}}
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{{#set: reaction found=15}}
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{{#set: gene associated=CHC_T00010014001_1|CHC_T00010060001_1|CHC_T00003761001_1|CHC_T00010236001|CHC_T00002773001_1|CHC_T00006912001_1|CHC_T00010340001_1|CHC_T00005385001_1|CHC_T00010308001_1|CHC_T00007274001_1|CHC_T00006787001_1|CHC_T00000427001_1|CHC_T00010310001_1|CHC_T00008647001_1|CHC_T00010142001|CHC_T00010115001_1|CHC_T00002063001_1|CHC_T00010264001_1|CHC_T00010236001_1|CHC_T00004762001_1|CHC_T00010215001_1|CHC_T00008748001_1|CHC_T00010142001_1|CHC_T00010296001_1|CHC_T00010233001_1|CHC_T00010240001_1|CHC_T00004041001_1|CHC_T00009449001_1|CHC_T00010189001_1|CHC_T00010221001_1}}
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{{#set: total reaction=22}}
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{{#set: in pathway=}}
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{{#set: completion rate=68.0}}
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{{#set: reconstruction category=orthology}}
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−
{{#set: reconstruction tool=pantograph}}
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−
{{#set: reconstruction source=galdieria.sulphuraria}}
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−
{{#set: reconstruction category=annotation}}
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−
{{#set: reconstruction tool=pathwaytools}}
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−
{{#set: reconstruction source=original_genome}}
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Latest revision as of 16:53, 9 January 2019

Pathway PWY66-341

  • common name:
    • cholesterol biosynthesis I
  • taxonomic range:
  • Synonym(s):

Reaction(s) found

15 reactions found over 22 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=PWY66-341&oldid=22409"