Difference between revisions of "PWY-7790"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN66-316 RXN66-316] == * direction: ** LEFT-TO-RIGHT * common name: ** 4α-hydroxymethyl-5&al...")
 
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN66-316 RXN66-316] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7790 PWY-7790] ==
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* direction:
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** LEFT-TO-RIGHT
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* common name:
 
* common name:
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** 4α-hydroxymethyl-5α-cholesta-8,24-dien-3β-ol dehydrogenase
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** UMP biosynthesis II
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* taxonomic range:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33682 TAX-33682]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* Synonym(s):
 
* Synonym(s):
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** uridine-5'-phosphate biosynthesis II
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** de novo biosynthesis of uridine-5'-phosphate II
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** de novo biosynthesis of uridine-5'-monophosphate II
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''5''' reactions found over '''6''' reactions in the full pathway
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** 1 [[PROTON]][c] '''+''' 1 [[NADH-P-OR-NOP]][c] '''+''' 1 [[CPD-4579]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[CPD-4580]][c] '''+''' 1 [[NAD-P-OR-NOP]][c] '''+''' 2 [[WATER]][c]
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* [[ASPCARBTRANS-RXN]]
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* With common name(s):
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** 2 associated gene(s):
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** 1 H+[c] '''+''' 1 NAD(P)H[c] '''+''' 1 4α-hydroxymethyl-5α-cholesta-8,24-dien-3β-ol[c] '''+''' 1 oxygen[c] '''=>''' 1 4α-formyl-5α-cholesta-8,24-dien-3β-ol[c] '''+''' 1 NAD(P)+[c] '''+''' 2 H2O[c]
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*** [[CHC_T00010056001_1]]
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*** [[CHC_T00005123001_1]]
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== Genes associated with this reaction  ==
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** 2 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-galdieria.sulphuraria]]
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* [[CHC_T00010320001_1]]
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*** [[orthology-ectocarpus_siliculosus]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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* [[CARBPSYN-RXN]]
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== Pathways  ==
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** 3 associated gene(s):
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* [[PWY66-341]], cholesterol biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-341 PWY66-341]
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*** [[CHC_T00010056001_1]]
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** '''14''' reactions found over '''22''' reactions in the full pathway
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*** [[CHC_T00008596001_1]]
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* [[PWY-6074]], zymosterol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6074 PWY-6074]
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*** [[CHC_70]]
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** '''10''' reactions found over '''12''' reactions in the full pathway
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** 3 reconstruction source(s) associated:
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* [[PWY66-4]], cholesterol biosynthesis III (via desmosterol): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-4 PWY66-4]
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*** [[orthology-galdieria.sulphuraria]]
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** '''15''' reactions found over '''22''' reactions in the full pathway
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*** [[annotation-original_genome]]
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== Reconstruction information  ==
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*** [[orthology-ectocarpus_siliculosus]]
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* [[orthology]]:
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* [[DIHYDROOROT-RXN]]
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** [[pantograph]]:
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** 5 associated gene(s):
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*** [[galdieria.sulphuraria]]
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*** [[CHC_T00010056001]]
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*** [[CHC_T00010056001_1]]
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*** [[CHC_T00005381001_1]]
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*** [[CHC_T00008596001_1]]
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*** [[CHC_T00006412001_1]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-galdieria.sulphuraria]]
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*** [[annotation-original_genome]]
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*** [[orthology-arabidopsis_thaliana]]
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* [[OROPRIBTRANS-RXN]]
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** 1 associated gene(s):
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*** [[CHC_T00002698001_1]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-galdieria.sulphuraria]]
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*** [[orthology-arabidopsis_thaliana]]
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*** [[orthology-ectocarpus_siliculosus]]
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* [[OROTPDECARB-RXN]]
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** 1 associated gene(s):
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*** [[CHC_T00002698001_1]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-galdieria.sulphuraria]]
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*** [[orthology-arabidopsis_thaliana]]
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*** [[orthology-ectocarpus_siliculosus]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9929 RXN-9929]
 
== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=UMP biosynthesis II}}
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{{#set: common name=4α-hydroxymethyl-5α-cholesta-8,24-dien-3β-ol dehydrogenase}}
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{{#set: taxonomic range=TAX-33682}}
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{{#set: gene associated=CHC_T00010320001_1}}
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{{#set: taxonomic range=TAX-4751}}
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{{#set: in pathway=PWY66-341|PWY-6074|PWY66-4}}
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{{#set: taxonomic range=TAX-2}}
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{{#set: reconstruction category=orthology}}
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{{#set: common name=uridine-5'-phosphate biosynthesis II|de novo biosynthesis of uridine-5'-phosphate II|de novo biosynthesis of uridine-5'-monophosphate II}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reaction found=5}}
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{{#set: reconstruction source=galdieria.sulphuraria}}
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{{#set: total reaction=6}}
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{{#set: completion rate=83.0}}

Latest revision as of 16:53, 9 January 2019

Pathway PWY-7790

  • common name:
    • UMP biosynthesis II
  • taxonomic range:
  • Synonym(s):
    • uridine-5'-phosphate biosynthesis II
    • de novo biosynthesis of uridine-5'-phosphate II
    • de novo biosynthesis of uridine-5'-monophosphate II

Reaction(s) found

5 reactions found over 6 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=PWY-7790&oldid=22413"