Difference between revisions of "2.8.1.6-RXN"

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(Created page with "Category:Gene == Gene CHC_T00009370001_1 == * Synonym(s): == Reactions associated == * PGLUCISOM-RXN ** pantograph-galdieria.sulphuraria == Pathways associate...")
 
 
(2 intermediate revisions by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene CHC_T00009370001_1 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.8.1.6-RXN 2.8.1.6-RXN] ==
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* direction:
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** LEFT-TO-RIGHT
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* common name:
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** biotin synthetase
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* ec number:
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** [http://enzyme.expasy.org/EC/2.8.1.6 EC-2.8.1.6]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[PGLUCISOM-RXN]]
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* With identifiers:
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** [[pantograph]]-[[galdieria.sulphuraria]]
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** 2 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[DETHIOBIOTIN]][c] '''+''' 1 [[Sulfurated-Sulfur-Acceptors]][c] '''+''' 2 [[Reduced-2Fe-2S-Ferredoxins]][c] '''=>''' 2 [[Oxidized-2Fe-2S-Ferredoxins]][c] '''+''' 1 [[BIOTIN]][c] '''+''' 2 [[MET]][c] '''+''' 1 [[Unsulfurated-Sulfur-Acceptors]][c] '''+''' 2 [[CH33ADO]][c]
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== Pathways associated ==
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* With common name(s):
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* [[RUMP-PWY]]
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** 2 S-adenosyl-L-methionine[c] '''+''' 1 dethiobiotin[c] '''+''' 1 a sulfurated [sulfur carrier][c] '''+''' 2 a reduced [2Fe-2S] ferredoxin[c] '''=>''' 2 an oxidized [2Fe-2S] ferredoxin[c] '''+''' 1 biotin[c] '''+''' 2 L-methionine[c] '''+''' 1 an unsulfurated [sulfur carrier][c] '''+''' 2 5'-deoxyadenosine[c]
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* [[GLYCOLYSIS]]
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* [[PWY-3801]]
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== Genes associated with this reaction  ==
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* [[PWY-7385]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[P124-PWY]]
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* Gene: [[CHC_T00009361001_1]]
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* [[PWY-6142]]
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** Source: [[orthology-galdieria.sulphuraria]]
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* [[PWY-5659]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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* [[PWY-6981]]
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* Gene: [[CHC_T00009361001]]
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* [[P341-PWY]]
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** Source: [[annotation-original_genome]]
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* [[PWY-5384]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* [[PWY-7347]]
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== Pathways  ==
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* [[PWY66-399]]
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* [[PWY0-1507]], biotin biosynthesis from 8-amino-7-oxononanoate I: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1507 PWY0-1507]
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* [[SUCSYN-PWY]]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[UDPNAGSYN-PWY]]
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* [[PWY-7380]], biotin biosynthesis from 8-amino-7-oxononanoate II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7380 PWY-7380]
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* [[PWY-621]]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-622]]
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== Reconstruction information  ==
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* [[PWY-5054]]
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* Category: [[orthology]]
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* [[PWY-6992]]
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** Source: [[orthology-galdieria.sulphuraria]]
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* [[ANAGLYCOLYSIS-PWY]]
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*** Tool: [[pantograph]]
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* [[GLUCONEO-PWY]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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* [[PWY-7238]]
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*** Tool: [[pantograph]]
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* [[PWY-5514]]
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* Category: [[annotation]]
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* [[P122-PWY]]
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** Source: [[annotation-original_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: reaction associated=PGLUCISOM-RXN}}
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* RHEA:
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{{#set: pathway associated=RUMP-PWY|GLYCOLYSIS|PWY-3801|PWY-7385|P124-PWY|PWY-6142|PWY-5659|PWY-6981|P341-PWY|PWY-5384|PWY-7347|PWY66-399|SUCSYN-PWY|UDPNAGSYN-PWY|PWY-621|PWY-622|PWY-5054|PWY-6992|ANAGLYCOLYSIS-PWY|GLUCONEO-PWY|PWY-7238|PWY-5514|P122-PWY}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22060 22060]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/Q9JRW7 Q9JRW7]
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** [http://www.uniprot.org/uniprot/Q9PLZ3 Q9PLZ3]
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** [http://www.uniprot.org/uniprot/P53557 P53557]
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** [http://www.uniprot.org/uniprot/O67104 O67104]
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** [http://www.uniprot.org/uniprot/P44987 P44987]
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** [http://www.uniprot.org/uniprot/Q58692 Q58692]
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** [http://www.uniprot.org/uniprot/P0A506 P0A506]
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** [http://www.uniprot.org/uniprot/Q9Z6L5 Q9Z6L5]
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** [http://www.uniprot.org/uniprot/Q9JUE3 Q9JUE3]
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** [http://www.uniprot.org/uniprot/P46396 P46396]
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** [http://www.uniprot.org/uniprot/Q47862 Q47862]
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** [http://www.uniprot.org/uniprot/P19206 P19206]
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** [http://www.uniprot.org/uniprot/P32451 P32451]
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** [http://www.uniprot.org/uniprot/P54967 P54967]
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** [http://www.uniprot.org/uniprot/P46715 P46715]
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** [http://www.uniprot.org/uniprot/P73538 P73538]
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** [http://www.uniprot.org/uniprot/P12996 P12996]
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** [http://www.uniprot.org/uniprot/O59778 O59778]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R01078 R01078]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=biotin synthetase}}
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{{#set: ec number=EC-2.8.1.6}}
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{{#set: gene associated=CHC_T00009361001_1|CHC_T00009361001}}
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{{#set: in pathway=PWY0-1507|PWY-7380}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=orthology-galdieria.sulphuraria|annotation-original_genome|orthology-ectocarpus_siliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 17:54, 9 January 2019

Reaction 2.8.1.6-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • biotin synthetase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY0-1507, biotin biosynthesis from 8-amino-7-oxononanoate I: PWY0-1507
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-7380, biotin biosynthesis from 8-amino-7-oxononanoate II: PWY-7380
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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