Difference between revisions of "RXN-12440"

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(Created page with "Category:Gene == Gene CHC_T00008496001 == * left end position: ** 185916 * transcription direction: ** POSITIVE * right end position: ** 186599 * centisome position: ** 61...")
 
 
(One intermediate revision by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene CHC_T00008496001 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12440 RXN-12440] ==
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* left end position:
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* direction:
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** 185916
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** Ascorbate Peroxidase, APX2
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* right end position:
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** Ascorbate Peroxidase, APX1
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** 186599
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/1.11.1.11 EC-1.11.1.11]
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** 61.174088   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[2.3.1.41-RXN]]
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* With identifiers:
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** original_genome
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** 1 [[PROTON]][c] '''+''' 1 [[HYDROGEN-PEROXIDE]][c] '''+''' 2 [[ASCORBATE]][c] '''=>''' 2 [[WATER]][c] '''+''' 1 [[L-DEHYDRO-ASCORBATE]][c] '''+''' 1 [[ASCORBATE]][c]
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***automated-name-match
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* With common name(s):
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* [[3-OXOACYL-ACP-REDUCT-RXN]]
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** 1 H+[c] '''+''' 1 hydrogen peroxide[c] '''+''' 2 L-ascorbate[c] '''=>''' 2 H2O[c] '''+''' 1 L-dehydro-ascorbate[c] '''+''' 1 L-ascorbate[c]
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** original_genome
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***automated-name-match
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== Genes associated with this reaction  ==
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* [[PYRIDOXAL-4-DEHYDROGENASE-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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** original_genome
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* Gene: [[CHC_T00008640001_1]]
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***automated-name-match
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** Source: [[orthology-galdieria.sulphuraria]]
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* [[RXN-10060]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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** original_genome
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* Gene: [[CHC_T00010024001_1]]
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***automated-name-match
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** Source: [[orthology-ectocarpus_siliculosus]]
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* [[RXN-10655]]
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* Gene: [[CHC_T00010024001]]
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** original_genome
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** Source: [[annotation-original_genome]]
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***automated-name-match
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*** Assignment: AUTOMATED-NAME-MATCH
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* [[RXN-10659]]
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* Gene: [[CHC_T00008640001]]
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** original_genome
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** Source: [[annotation-original_genome]]
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***automated-name-match
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*** Assignment: AUTOMATED-NAME-MATCH
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* [[RXN-11476]]
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== Pathways ==
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** original_genome
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* [[PWY-6960]], L-ascorbate degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6960 PWY-6960]
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***automated-name-match
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** '''1''' reactions found over '''6''' reactions in the full pathway
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* [[RXN-11480]]
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* [[PWY-6959]], L-ascorbate degradation V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6959 PWY-6959]
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** original_genome
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** '''1''' reactions found over '''5''' reactions in the full pathway
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***automated-name-match
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* [[PWY-6961]], L-ascorbate degradation II (bacterial, aerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6961 PWY-6961]
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* [[RXN-12994]]
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** '''1''' reactions found over '''8''' reactions in the full pathway
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** original_genome
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== Reconstruction information  ==
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***automated-name-match
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* Category: [[orthology]]
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* [[RXN-13008]]
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** Source: [[orthology-galdieria.sulphuraria]]
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** original_genome
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*** Tool: [[pantograph]]
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***automated-name-match
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** Source: [[orthology-ectocarpus_siliculosus]]
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* [[RXN-13443]]
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*** Tool: [[pantograph]]
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** original_genome
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* Category: [[annotation]]
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***automated-name-match
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** Source: [[annotation-original_genome]]
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* [[RXN-16616]]
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*** Tool: [[pathwaytools]]
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** original_genome
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***automated-name-match
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* [[RXN-16622]]
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** original_genome
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***automated-name-match
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* [[RXN-16626]]
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** original_genome
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***automated-name-match
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* [[RXN-16630]]
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** original_genome
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***automated-name-match
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* [[RXN-9514]]
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** original_genome
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***automated-name-match
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* [[RXN-9518]]
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** original_genome
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***automated-name-match
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* [[RXN-9524]]
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** original_genome
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***automated-name-match
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* [[RXN-9528]]
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** original_genome
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***automated-name-match
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* [[RXN-9532]]
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** original_genome
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***automated-name-match
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* [[RXN-9536]]
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** original_genome
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***automated-name-match
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* [[RXN-9540]]
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** original_genome
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***automated-name-match
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* [[RXN-9552]]
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** original_genome
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***automated-name-match
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* [[RXN-9556]]
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** original_genome
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***automated-name-match
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* [[RXN-9633]]
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** original_genome
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***automated-name-match
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* [[RXN0-2142]]
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** original_genome
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***automated-name-match
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* [[RXN1G-157]]
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** original_genome
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***automated-name-match
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* [[RXN1G-349]]
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** original_genome
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***automated-name-match
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* [[RXN1G-469]]
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** original_genome
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***automated-name-match
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* [[RXN1G-508]]
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** original_genome
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***automated-name-match
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== Pathways associated ==
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* [[PWY-7388]]
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* [[PWY-5367]]
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* [[PWY-5973]]
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* [[PWY-5971]]
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* [[PWY-5499]]
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* [[PWY0-862]]
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* [[PWY-7053]]
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* [[PWY-6113]]
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* [[PWY-7619]]
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* [[PWY-6282]]
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* [[PWY-5994]]
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* [[PWY3O-355]]
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* [[PWY-7724]]
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* [[PWY-7727]]
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* [[FASYN-ELONG-PWY]]
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* [[PWY-6519]]
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* [[PWY-7602]]
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* [[PWY-7606]]
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* [[PWY-5989]]
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* [[PWYG-321]]
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* [[PWY-7663]]
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* [[PWY-7664]]
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== External links  ==
 
== External links  ==
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{{#set: left end position=185916}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: transcription direction=POSITIVE}}
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{{#set: common name=Ascorbate Peroxidase, APX2}}
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{{#set: right end position=186599}}
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{{#set: common name=Ascorbate Peroxidase, APX1}}
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{{#set: centisome position=61.174088    }}
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{{#set: ec number=EC-1.11.1.11}}
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{{#set: reaction associated=2.3.1.41-RXN|3-OXOACYL-ACP-REDUCT-RXN|PYRIDOXAL-4-DEHYDROGENASE-RXN|RXN-10060|RXN-10655|RXN-10659|RXN-11476|RXN-11480|RXN-12994|RXN-13008|RXN-13443|RXN-16616|RXN-16622|RXN-16626|RXN-16630|RXN-9514|RXN-9518|RXN-9524|RXN-9528|RXN-9532|RXN-9536|RXN-9540|RXN-9552|RXN-9556|RXN-9633|RXN0-2142|RXN1G-157|RXN1G-349|RXN1G-469|RXN1G-508}}
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{{#set: gene associated=CHC_T00008640001_1|CHC_T00010024001_1|CHC_T00010024001|CHC_T00008640001}}
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{{#set: pathway associated=PWY-7388|PWY-5367|PWY-5973|PWY-5971|PWY-5499|PWY0-862|PWY-7053|PWY-6113|PWY-7619|PWY-6282|PWY-5994|PWY3O-355|PWY-7724|PWY-7727|FASYN-ELONG-PWY|PWY-6519|PWY-7602|PWY-7606|PWY-5989|PWYG-321|PWY-7663|PWY-7664}}
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{{#set: in pathway=PWY-6960|PWY-6959|PWY-6961}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=orthology-galdieria.sulphuraria|annotation-original_genome|orthology-ectocarpus_siliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 18:01, 9 January 2019

Reaction RXN-12440

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Ascorbate Peroxidase, APX2
    • Ascorbate Peroxidase, APX1
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6960, L-ascorbate degradation III: PWY-6960
    • 1 reactions found over 6 reactions in the full pathway
  • PWY-6959, L-ascorbate degradation V: PWY-6959
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-6961, L-ascorbate degradation II (bacterial, aerobic): PWY-6961
    • 1 reactions found over 8 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=RXN-12440&oldid=22592"