Difference between revisions of "CHC 490"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CARBPSYN-RXN CARBPSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** carbamoyl phosphate s...")
 
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=CARBPSYN-RXN CARBPSYN-RXN] ==
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== Gene CHC_490 ==
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* direction:
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** LEFT-TO-RIGHT
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* common name:
 
* common name:
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** carbamoyl phosphate synthase small subunit
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** rpoA
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/6.3.5.5 EC-6.3.5.5]
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** 71221
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* transcription direction:
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** NEGATIVE
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* right end position:
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** 72153
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* centisome position:
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** 39.548325   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[DNA-DIRECTED-RNA-POLYMERASE-RXN]]
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** 2 [[ATP]][c] '''+''' 1 [[GLN]][c] '''+''' 1 [[HCO3]][c] '''+''' 1 [[WATER]][c] '''=>''' 2 [[PROTON]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[GLT]][c] '''+''' 2 [[ADP]][c] '''+''' 1 [[CARBAMOYL-P]][c]
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** Source: [[annotation-original_genome]]
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* With common name(s):
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*** Assignment: automated-name-match
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** 2 ATP[c] '''+''' 1 L-glutamine[c] '''+''' 1 hydrogencarbonate[c] '''+''' 1 H2O[c] '''=>''' 2 H+[c] '''+''' 1 phosphate[c] '''+''' 1 L-glutamate[c] '''+''' 2 ADP[c] '''+''' 1 carbamoyl phosphate[c]
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== Pathways associated ==
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[CHC_T00010056001_1]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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* [[CHC_70]]
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** ORIGINAL_GENOME
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***AUTOMATED-NAME-MATCH
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* [[CHC_T00008596001_1]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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== Pathways  ==
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* [[ARGSYN-PWY]], L-arginine biosynthesis I (via L-ornithine): [http://metacyc.org/META/NEW-IMAGE?object=ARGSYN-PWY ARGSYN-PWY]
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** '''5''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-5154]], L-arginine biosynthesis III (via N-acetyl-L-citrulline): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5154 PWY-5154]
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** '''8''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7790]], UMP biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7790 PWY-7790]
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** '''5''' reactions found over '''6''' reactions in the full pathway
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* [[ARGSYNBSUB-PWY]], L-arginine biosynthesis II (acetyl cycle): [http://metacyc.org/META/NEW-IMAGE?object=ARGSYNBSUB-PWY ARGSYNBSUB-PWY]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7400]], L-arginine biosynthesis IV (archaebacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7400 PWY-7400]
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** '''7''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7791]], UMP biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7791 PWY-7791]
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** '''5''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-5686]], UMP biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5686 PWY-5686]
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** '''5''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[galdieria.sulphuraria]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[original_genome]]
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== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: common name=rpoA}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00575 R00575]
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{{#set: left end position=71221}}
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* UNIPROT:
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{{#set: transcription direction=NEGATIVE}}
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** [http://www.uniprot.org/uniprot/P08955 P08955]
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{{#set: right end position=72153}}
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** [http://www.uniprot.org/uniprot/P13258 P13258]
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{{#set: centisome position=39.548325    }}
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** [http://www.uniprot.org/uniprot/P38099 P38099]
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{{#set: reaction associated=DNA-DIRECTED-RNA-POLYMERASE-RXN}}
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** [http://www.uniprot.org/uniprot/P27708 P27708]
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** [http://www.uniprot.org/uniprot/Q91437 Q91437]
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** [http://www.uniprot.org/uniprot/O28994 O28994]
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** [http://www.uniprot.org/uniprot/P57689 P57689]
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** [http://www.uniprot.org/uniprot/P38098 P38098]
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** [http://www.uniprot.org/uniprot/Q9WZ27 Q9WZ27]
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** [http://www.uniprot.org/uniprot/Q9PMG8 Q9PMG8]
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** [http://www.uniprot.org/uniprot/Q9JXW8 Q9JXW8]
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** [http://www.uniprot.org/uniprot/Q9JVZ6 Q9JVZ6]
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** [http://www.uniprot.org/uniprot/P25993 P25993]
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** [http://www.uniprot.org/uniprot/Q9PIL7 Q9PIL7]
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** [http://www.uniprot.org/uniprot/P25994 P25994]
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** [http://www.uniprot.org/uniprot/Q9JW02 Q9JW02]
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** [http://www.uniprot.org/uniprot/O25577 O25577]
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** [http://www.uniprot.org/uniprot/P52557 P52557]
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** [http://www.uniprot.org/uniprot/P46537 P46537]
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** [http://www.uniprot.org/uniprot/P18185 P18185]
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** [http://www.uniprot.org/uniprot/P07259 P07259]
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** [http://www.uniprot.org/uniprot/P20054 P20054]
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** [http://www.uniprot.org/uniprot/P05990 P05990]
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** [http://www.uniprot.org/uniprot/P14845 P14845]
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** [http://www.uniprot.org/uniprot/Q06950 Q06950]
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** [http://www.uniprot.org/uniprot/Q92115 Q92115]
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** [http://www.uniprot.org/uniprot/Q09794 Q09794]
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** [http://www.uniprot.org/uniprot/P03965 P03965]
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** [http://www.uniprot.org/uniprot/P07258 P07258]
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** [http://www.uniprot.org/uniprot/P00968 P00968]
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** [http://www.uniprot.org/uniprot/P0A6F1 P0A6F1]
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** [http://www.uniprot.org/uniprot/P93345 P93345]
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** [http://www.uniprot.org/uniprot/Q27732 Q27732]
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** [http://www.uniprot.org/uniprot/Q27448 Q27448]
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** [http://www.uniprot.org/uniprot/O50236 O50236]
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** [http://www.uniprot.org/uniprot/O94313 O94313]
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** [http://www.uniprot.org/uniprot/Q59968 Q59968]
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** [http://www.uniprot.org/uniprot/Q59969 Q59969]
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** [http://www.uniprot.org/uniprot/O50301 O50301]
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** [http://www.uniprot.org/uniprot/O50302 O50302]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=carbamoyl phosphate synthase small subunit}}
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{{#set: ec number=EC-6.3.5.5}}
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{{#set: gene associated=CHC_T00010056001_1|CHC_70|CHC_T00008596001_1}}
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{{#set: in pathway=ARGSYN-PWY|PWY-5154|PWY-7790|ARGSYNBSUB-PWY|PWY-7400|PWY-7791|PWY-5686}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=galdieria.sulphuraria}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=original_genome}}
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Latest revision as of 18:06, 9 January 2019

Gene CHC_490

  • common name:
    • rpoA
  • left end position:
    • 71221
  • transcription direction:
    • NEGATIVE
  • right end position:
    • 72153
  • centisome position:
    • 39.548325
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=CHC_490&oldid=22695"