Difference between revisions of "RXN-16393"
From metabolic_network
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[[Category:Reaction]] | [[Category:Reaction]] | ||
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object= | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16393 RXN-16393] == |
* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
* common name: | * common name: | ||
| − | ** | + | ** long-chain-fatty-acid-CoA ligase |
* ec number: | * ec number: | ||
| − | ** [http://enzyme.expasy.org/EC/2 | + | ** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3] |
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
| − | ** 1 [[ | + | ** 1 [[CO-A]][c] '''+''' 1 [[DODECANOATE]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[LAUROYLCOA-CPD]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c] |
* With common name(s): | * With common name(s): | ||
| − | ** 1 | + | ** 1 coenzyme A[c] '''+''' 1 laurate[c] '''+''' 1 ATP[c] '''=>''' 1 lauroyl-CoA[c] '''+''' 1 diphosphate[c] '''+''' 1 AMP[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
| − | * [[ | + | * Gene: [[CHC_T00009428001]] |
| − | ** | + | ** Source: [[annotation-original_genome]] |
| − | ***AUTOMATED-NAME-MATCH | + | *** Assignment: AUTOMATED-NAME-MATCH |
| − | * [[ | + | * Gene: [[CHC_T00008500001_1]] |
| − | ** [[ | + | ** Source: [[orthology-galdieria.sulphuraria]] |
| − | * [[ | + | ** Source: [[orthology-ectocarpus_siliculosus]] |
| − | ** [[ | + | * Gene: [[CHC_T00008811001_1]] |
| + | ** Source: [[orthology-galdieria.sulphuraria]] | ||
| + | * Gene: [[CHC_T00008811001]] | ||
| + | ** Source: [[annotation-original_genome]] | ||
| + | *** Assignment: AUTOMATED-NAME-MATCH | ||
| + | * Gene: [[CHC_T00009428001_1]] | ||
| + | ** Source: [[orthology-galdieria.sulphuraria]] | ||
| + | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
| + | * Gene: [[CHC_T00008160001_1]] | ||
| + | ** Source: [[orthology-galdieria.sulphuraria]] | ||
== Pathways == | == Pathways == | ||
| + | * [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971] | ||
| + | ** '''31''' reactions found over '''31''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
| − | * [[orthology]]: | + | * Category: [[orthology]] |
| − | ** [[pantograph]]: | + | ** Source: [[orthology-galdieria.sulphuraria]] |
| − | *** [[ | + | *** Tool: [[pantograph]] |
| − | * [[annotation]] | + | ** Source: [[orthology-ectocarpus_siliculosus]] |
| − | ** [[ | + | *** Tool: [[pantograph]] |
| − | *** [[ | + | * Category: [[annotation]] |
| + | ** Source: [[annotation-original_genome]] | ||
| + | *** Tool: [[pathwaytools]] | ||
== External links == | == External links == | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
| − | {{#set: common name= | + | {{#set: common name=long-chain-fatty-acid-CoA ligase}} |
| − | {{#set: ec number=EC-2 | + | {{#set: ec number=EC-6.2.1.3}} |
| − | {{#set: gene associated= | + | {{#set: gene associated=CHC_T00009428001|CHC_T00008500001_1|CHC_T00008811001_1|CHC_T00008811001|CHC_T00009428001_1|CHC_T00008160001_1}} |
| − | {{#set: in pathway=}} | + | {{#set: in pathway=PWY-5971}} |
| − | {{#set: reconstruction category=orthology | + | {{#set: reconstruction category=orthology|annotation}} |
| − | + | {{#set: reconstruction source=orthology-galdieria.sulphuraria|annotation-original_genome|orthology-ectocarpus_siliculosus}} | |
| − | {{#set: reconstruction source=galdieria.sulphuraria | + | {{#set: reconstruction tool=pantograph|pathwaytools}} |
| − | + | ||
| − | {{#set: reconstruction tool=pathwaytools | + | |
| − | + | ||
Latest revision as of 17:13, 9 January 2019
Contents
Reaction RXN-16393
- direction:
- LEFT-TO-RIGHT
- common name:
- long-chain-fatty-acid-CoA ligase
- ec number:
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 CO-A[c] + 1 DODECANOATE[c] + 1 ATP[c] => 1 LAUROYLCOA-CPD[c] + 1 PPI[c] + 1 AMP[c]
- With common name(s):
- 1 coenzyme A[c] + 1 laurate[c] + 1 ATP[c] => 1 lauroyl-CoA[c] + 1 diphosphate[c] + 1 AMP[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: CHC_T00009428001
- Source: annotation-original_genome
- Assignment: AUTOMATED-NAME-MATCH
- Source: annotation-original_genome
- Gene: CHC_T00008500001_1
- Source: orthology-galdieria.sulphuraria
- Source: orthology-ectocarpus_siliculosus
- Gene: CHC_T00008811001_1
- Source: orthology-galdieria.sulphuraria
- Gene: CHC_T00008811001
- Source: annotation-original_genome
- Assignment: AUTOMATED-NAME-MATCH
- Source: annotation-original_genome
- Gene: CHC_T00009428001_1
- Source: orthology-galdieria.sulphuraria
- Source: orthology-ectocarpus_siliculosus
- Gene: CHC_T00008160001_1
- Source: orthology-galdieria.sulphuraria
Pathways
- PWY-5971, palmitate biosynthesis II (bacteria and plants): PWY-5971
- 31 reactions found over 31 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-galdieria.sulphuraria
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-galdieria.sulphuraria
- Category: annotation
- Source: annotation-original_genome
- Tool: pathwaytools
- Source: annotation-original_genome
