Difference between revisions of "PHENYLALANINE-AMMONIA-LYASE-RXN"

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(Created page with "Category:Gene == Gene CHC_T00009548001 == * left end position: ** 127996 * transcription direction: ** NEGATIVE * right end position: ** 130866 * centisome position: ** 63...")
 
 
(One intermediate revision by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene CHC_T00009548001 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHENYLALANINE-AMMONIA-LYASE-RXN PHENYLALANINE-AMMONIA-LYASE-RXN] ==
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* left end position:
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* direction:
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** 127996
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** LEFT-TO-RIGHT
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* transcription direction:
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* ec number:
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** NEGATIVE
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** [http://enzyme.expasy.org/EC/4.3.1.25 EC-4.3.1.25]
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* right end position:
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** [http://enzyme.expasy.org/EC/4.3.1.24 EC-4.3.1.24]
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** 130866
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* centisome position:
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** 63.701786   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[ALANINE--TRNA-LIGASE-RXN]]
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* With identifiers:
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** original_genome
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** 1 [[PHE]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[CPD-674]][c]
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***automated-name-match
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* With common name(s):
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== Pathways associated ==
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** 1 L-phenylalanine[c] '''=>''' 1 ammonium[c] '''+''' 1 trans-cinnamate[c]
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* [[TRNA-CHARGING-PWY]]
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== Genes associated with this reaction  ==
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== Pathways  ==
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* [[PWY-1121]], suberin monomers biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-1121 PWY-1121]
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** '''8''' reactions found over '''19''' reactions in the full pathway
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* [[PWY1F-467]], phenylpropanoid biosynthesis, initial reactions: [http://metacyc.org/META/NEW-IMAGE?object=PWY1F-467 PWY1F-467]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-6444]], benzoate biosynthesis II (CoA-independent, non-β-oxidative): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6444 PWY-6444]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-6457]], trans-cinnamoyl-CoA biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6457 PWY-6457]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-5883]], ephedrine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5883 PWY-5883]
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** '''2''' reactions found over '''8''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[gap-filling]]
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** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
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*** Tool: [[meneco]]
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**** Comment: [[added for gapfilling]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=127996}}
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* RHEA:
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{{#set: transcription direction=NEGATIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21384 21384]
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{{#set: right end position=130866}}
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* UNIPROT:
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{{#set: centisome position=63.701786    }}
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** [http://www.uniprot.org/uniprot/P11544 P11544]
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{{#set: reaction associated=ALANINE--TRNA-LIGASE-RXN}}
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** [http://www.uniprot.org/uniprot/O49835 O49835]
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{{#set: pathway associated=TRNA-CHARGING-PWY}}
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** [http://www.uniprot.org/uniprot/O49836 O49836]
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** [http://www.uniprot.org/uniprot/P10248 P10248]
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** [http://www.uniprot.org/uniprot/P19142 P19142]
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** [http://www.uniprot.org/uniprot/P19143 P19143]
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** [http://www.uniprot.org/uniprot/P07218 P07218]
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** [http://www.uniprot.org/uniprot/P24481 P24481]
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** [http://www.uniprot.org/uniprot/P27990 P27990]
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** [http://www.uniprot.org/uniprot/Q42960 Q42960]
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** [http://www.uniprot.org/uniprot/P31425 P31425]
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** [http://www.uniprot.org/uniprot/P27991 P27991]
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** [http://www.uniprot.org/uniprot/Q01861 Q01861]
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** [http://www.uniprot.org/uniprot/P35512 P35512]
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** [http://www.uniprot.org/uniprot/Q7M1Q5 Q7M1Q5]
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** [http://www.uniprot.org/uniprot/P14166 P14166]
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** [http://www.uniprot.org/uniprot/P45728 P45728]
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** [http://www.uniprot.org/uniprot/P45729 P45729]
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** [http://www.uniprot.org/uniprot/Q39545 Q39545]
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** [http://www.uniprot.org/uniprot/P35510 P35510]
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** [http://www.uniprot.org/uniprot/Q39796 Q39796]
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** [http://www.uniprot.org/uniprot/P53443 P53443]
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** [http://www.uniprot.org/uniprot/P25872 P25872]
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** [http://www.uniprot.org/uniprot/P31426 P31426]
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** [http://www.uniprot.org/uniprot/P35513 P35513]
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** [http://www.uniprot.org/uniprot/Q08063 Q08063]
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** [http://www.uniprot.org/uniprot/P45733 P45733]
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** [http://www.uniprot.org/uniprot/O04875 O04875]
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** [http://www.uniprot.org/uniprot/O04869 O04869]
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** [http://www.uniprot.org/uniprot/O04876 O04876]
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** [http://www.uniprot.org/uniprot/Q42851 Q42851]
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** [http://www.uniprot.org/uniprot/Q43210 Q43210]
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** [http://www.uniprot.org/uniprot/Q43211 Q43211]
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** [http://www.uniprot.org/uniprot/Q43664 Q43664]
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** [http://www.uniprot.org/uniprot/P52777 P52777]
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** [http://www.uniprot.org/uniprot/Q42858 Q42858]
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** [http://www.uniprot.org/uniprot/O04058 O04058]
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** [http://www.uniprot.org/uniprot/O23865 O23865]
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** [http://www.uniprot.org/uniprot/P45724 P45724]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R00697 R00697]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: ec number=EC-4.3.1.25}}
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{{#set: ec number=EC-4.3.1.24}}
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{{#set: in pathway=PWY-1121|PWY1F-467|PWY-6444|PWY-6457|PWY-5883}}
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{{#set: reconstruction category=gap-filling}}
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{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
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{{#set: reconstruction tool=meneco}}
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{{#set: reconstruction comment=added for gapfilling}}

Latest revision as of 17:29, 9 January 2019

Reaction PHENYLALANINE-AMMONIA-LYASE-RXN

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 L-phenylalanine[c] => 1 ammonium[c] + 1 trans-cinnamate[c]

Genes associated with this reaction

Pathways

  • PWY-1121, suberin monomers biosynthesis: PWY-1121
    • 8 reactions found over 19 reactions in the full pathway
  • PWY1F-467, phenylpropanoid biosynthesis, initial reactions: PWY1F-467
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6444, benzoate biosynthesis II (CoA-independent, non-β-oxidative): PWY-6444
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-6457, trans-cinnamoyl-CoA biosynthesis: PWY-6457
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-5883, ephedrine biosynthesis: PWY-5883
    • 2 reactions found over 8 reactions in the full pathway

Reconstruction information

External links





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