Difference between revisions of "DXS-RXN"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DXS-RXN DXS-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** 1-deoxyxylulose-5-phosphate syn...") |
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** Source: [[orthology-arabidopsis_thaliana]] | ** Source: [[orthology-arabidopsis_thaliana]] | ||
== Pathways == | == Pathways == | ||
| − | * [[ | + | * [[PWY-7560]], methylerythritol phosphate pathway II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7560 PWY-7560] |
| − | ** ''' | + | ** '''8''' reactions found over '''9''' reactions in the full pathway |
* [[PYRIDOXSYN-PWY]], pyridoxal 5'-phosphate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PYRIDOXSYN-PWY PYRIDOXSYN-PWY] | * [[PYRIDOXSYN-PWY]], pyridoxal 5'-phosphate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PYRIDOXSYN-PWY PYRIDOXSYN-PWY] | ||
** '''3''' reactions found over '''8''' reactions in the full pathway | ** '''3''' reactions found over '''8''' reactions in the full pathway | ||
| Line 56: | Line 56: | ||
* [[PWY-6892]], thiazole biosynthesis I (facultative anaerobic bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6892 PWY-6892] | * [[PWY-6892]], thiazole biosynthesis I (facultative anaerobic bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6892 PWY-6892] | ||
** '''3''' reactions found over '''7''' reactions in the full pathway | ** '''3''' reactions found over '''7''' reactions in the full pathway | ||
| − | * [[ | + | * [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=NONMEVIPP-PWY NONMEVIPP-PWY] |
| − | ** ''' | + | ** '''7''' reactions found over '''9''' reactions in the full pathway |
== Reconstruction information == | == Reconstruction information == | ||
* Category: [[orthology]] | * Category: [[orthology]] | ||
| + | ** Source: [[orthology-galdieria.sulphuraria]] | ||
| + | *** Tool: [[pantograph]] | ||
** Source: [[orthology-arabidopsis_thaliana]] | ** Source: [[orthology-arabidopsis_thaliana]] | ||
*** Tool: [[pantograph]] | *** Tool: [[pantograph]] | ||
** Source: [[orthology-ectocarpus_siliculosus]] | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
| − | |||
| − | |||
*** Tool: [[pantograph]] | *** Tool: [[pantograph]] | ||
* Category: [[annotation]] | * Category: [[annotation]] | ||
| Line 78: | Line 78: | ||
{{#set: ec number=EC-2.2.1.7}} | {{#set: ec number=EC-2.2.1.7}} | ||
{{#set: gene associated=CHC_T00003402001_1|CHC_T00008758001|CHC_T00001454001_1|CHC_T00000865001_1|CHC_T00009061001_1|CHC_T00008758001_1|CHC_T00003376001_1|CHC_T00001730001_1|CHC_T00000866001_1}} | {{#set: gene associated=CHC_T00003402001_1|CHC_T00008758001|CHC_T00001454001_1|CHC_T00000865001_1|CHC_T00009061001_1|CHC_T00008758001_1|CHC_T00003376001_1|CHC_T00001730001_1|CHC_T00000866001_1}} | ||
| − | {{#set: in pathway= | + | {{#set: in pathway=PWY-7560|PYRIDOXSYN-PWY|PWY-6891|PWY-6892|NONMEVIPP-PWY}} |
{{#set: reconstruction category=orthology|annotation}} | {{#set: reconstruction category=orthology|annotation}} | ||
| − | {{#set: reconstruction source=annotation-original_genome|orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus | + | {{#set: reconstruction source=orthology-galdieria.sulphuraria|annotation-original_genome|orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus}} |
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
Latest revision as of 17:31, 9 January 2019
Contents
Reaction DXS-RXN
- direction:
- LEFT-TO-RIGHT
- common name:
- 1-deoxyxylulose-5-phosphate synthase
- ec number:
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 GAP[c] + 1 PROTON[c] + 1 PYRUVATE[c] => 1 CARBON-DIOXIDE[c] + 1 DEOXYXYLULOSE-5P[c]
- With common name(s):
- 1 D-glyceraldehyde 3-phosphate[c] + 1 H+[c] + 1 pyruvate[c] => 1 CO2[c] + 1 1-deoxy-D-xylulose 5-phosphate[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: CHC_T00003402001_1
- Source: orthology-ectocarpus_siliculosus
- Source: orthology-arabidopsis_thaliana
- Gene: CHC_T00008758001
- Source: annotation-original_genome
- Assignment: AUTOMATED-NAME-MATCH
- Source: annotation-original_genome
- Gene: CHC_T00001454001_1
- Source: orthology-ectocarpus_siliculosus
- Source: orthology-arabidopsis_thaliana
- Gene: CHC_T00000865001_1
- Source: orthology-ectocarpus_siliculosus
- Source: orthology-arabidopsis_thaliana
- Gene: CHC_T00009061001_1
- Source: orthology-galdieria.sulphuraria
- Source: orthology-ectocarpus_siliculosus
- Source: orthology-arabidopsis_thaliana
- Gene: CHC_T00008758001_1
- Source: orthology-galdieria.sulphuraria
- Source: orthology-ectocarpus_siliculosus
- Source: orthology-arabidopsis_thaliana
- Gene: CHC_T00003376001_1
- Source: orthology-ectocarpus_siliculosus
- Source: orthology-arabidopsis_thaliana
- Gene: CHC_T00001730001_1
- Source: orthology-galdieria.sulphuraria
- Source: orthology-ectocarpus_siliculosus
- Source: orthology-arabidopsis_thaliana
- Gene: CHC_T00000866001_1
- Source: orthology-ectocarpus_siliculosus
- Source: orthology-arabidopsis_thaliana
Pathways
- PWY-7560, methylerythritol phosphate pathway II: PWY-7560
- 8 reactions found over 9 reactions in the full pathway
- PYRIDOXSYN-PWY, pyridoxal 5'-phosphate biosynthesis I: PYRIDOXSYN-PWY
- 3 reactions found over 8 reactions in the full pathway
- PWY-6891, thiazole biosynthesis II (aerobic bacteria): PWY-6891
- 3 reactions found over 7 reactions in the full pathway
- PWY-6892, thiazole biosynthesis I (facultative anaerobic bacteria): PWY-6892
- 3 reactions found over 7 reactions in the full pathway
- NONMEVIPP-PWY, methylerythritol phosphate pathway I: NONMEVIPP-PWY
- 7 reactions found over 9 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-galdieria.sulphuraria
- Tool: pantograph
- Source: orthology-arabidopsis_thaliana
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-galdieria.sulphuraria
- Category: annotation
- Source: annotation-original_genome
- Tool: pathwaytools
- Source: annotation-original_genome
External links
