Difference between revisions of "VALINE--TRNA-LIGASE-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=GLC-D-LACTONE GLC-D-LACTONE] == * smiles: ** C(O)C1(OC(C(C(C1O)O)O)=O) * inchi key: ** InChIKey...")
 
 
(One intermediate revision by the same user not shown)
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=GLC-D-LACTONE GLC-D-LACTONE] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=VALINE--TRNA-LIGASE-RXN VALINE--TRNA-LIGASE-RXN] ==
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* smiles:
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* direction:
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** C(O)C1(OC(C(C(C1O)O)O)=O)
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** LEFT-TO-RIGHT
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* inchi key:
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* ec number:
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** InChIKey=PHOQVHQSTUBQQK-SQOUGZDYSA-N
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** [http://enzyme.expasy.org/EC/6.1.1.9 EC-6.1.1.9]
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* common name:
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** D-glucono-1,5-lactone
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* molecular weight:
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** 178.141   
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* Synonym(s):
 
* Synonym(s):
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** 3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydropyran-2-one
 
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** gluconolactone
 
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** glucono-1,5-lactone
 
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** 1,5-gluconolactone
 
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** D-gluconolactone
 
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** glucono-δ-lactone
 
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** δ-gluconolactone
 
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** D-glucono-δ-lactone
 
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** gluconic lactone
 
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** gluconic acid lactone
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[GLUCONOLACT-RXN]]
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[VAL]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[VAL-tRNAs]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[Charged-VAL-tRNAs]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
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* [[RXN-17229]]
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** 1 L-valine[c] '''+''' 1 ATP[c] '''+''' 1 a tRNAval[c] '''=>''' 1 diphosphate[c] '''+''' 1 AMP[c] '''+''' 1 an L-valyl-[tRNAval][c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[CHC_T00005897001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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* Gene: [[CHC_T00001234001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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== Pathways  ==
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* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
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** '''21''' reactions found over '''21''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-galdieria.sulphuraria]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
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* CAS : 90-80-2
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* RHEA:
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* DRUGBANK : DB04564
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10704 10704]
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* PUBCHEM:
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* UNIPROT:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=7027 7027]
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** [http://www.uniprot.org/uniprot/P28350 P28350]
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* HMDB : HMDB00150
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** [http://www.uniprot.org/uniprot/P36420 P36420]
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* LIGAND-CPD:
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** [http://www.uniprot.org/uniprot/P56000 P56000]
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** [http://www.genome.jp/dbget-bin/www_bget?C00198 C00198]
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** [http://www.uniprot.org/uniprot/O51680 O51680]
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* CHEMSPIDER:
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** [http://www.uniprot.org/uniprot/O67411 O67411]
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** [http://www.chemspider.com/Chemical-Structure.6760.html 6760]
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** [http://www.uniprot.org/uniprot/O83998 O83998]
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* CHEBI:
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** [http://www.uniprot.org/uniprot/Q9ZCN6 Q9ZCN6]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=16217 16217]
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** [http://www.uniprot.org/uniprot/Q9Z987 Q9Z987]
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{{#set: smiles=C(O)C1(OC(C(C(C1O)O)O)=O)}}
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** [http://www.uniprot.org/uniprot/Q9X2D7 Q9X2D7]
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{{#set: inchi key=InChIKey=PHOQVHQSTUBQQK-SQOUGZDYSA-N}}
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** [http://www.uniprot.org/uniprot/Q9ZK61 Q9ZK61]
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{{#set: common name=D-glucono-1,5-lactone}}
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** [http://www.uniprot.org/uniprot/Q9CDP6 Q9CDP6]
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{{#set: molecular weight=178.141    }}
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** [http://www.uniprot.org/uniprot/Q58413 Q58413]
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{{#set: common name=3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydropyran-2-one|gluconolactone|glucono-1,5-lactone|1,5-gluconolactone|D-gluconolactone|glucono-δ-lactone|δ-gluconolactone|D-glucono-δ-lactone|gluconic lactone|gluconic acid lactone}}
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** [http://www.uniprot.org/uniprot/P43834 P43834]
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{{#set: consumed by=GLUCONOLACT-RXN}}
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** [http://www.uniprot.org/uniprot/Q9PPE4 Q9PPE4]
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{{#set: consumed or produced by=RXN-17229}}
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** [http://www.uniprot.org/uniprot/O84304 O84304]
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** [http://www.uniprot.org/uniprot/P47576 P47576]
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** [http://www.uniprot.org/uniprot/Q94678 Q94678]
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** [http://www.uniprot.org/uniprot/Q04462 Q04462]
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** [http://www.uniprot.org/uniprot/P26640 P26640]
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** [http://www.uniprot.org/uniprot/Q05873 Q05873]
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** [http://www.uniprot.org/uniprot/Q26177 Q26177]
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** [http://www.uniprot.org/uniprot/P75304 P75304]
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** [http://www.uniprot.org/uniprot/Q49021 Q49021]
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** [http://www.uniprot.org/uniprot/P11931 P11931]
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** [http://www.uniprot.org/uniprot/P07806 P07806]
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** [http://www.uniprot.org/uniprot/P07118 P07118]
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** [http://www.uniprot.org/uniprot/O77443 O77443]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R03665 R03665]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: ec number=EC-6.1.1.9}}
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{{#set: gene associated=CHC_T00005897001_1|CHC_T00001234001_1}}
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{{#set: in pathway=TRNA-CHARGING-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-galdieria.sulphuraria|orthology-ectocarpus_siliculosus}}
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{{#set: reconstruction tool=pantograph}}

Latest revision as of 18:36, 9 January 2019

Reaction VALINE--TRNA-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 L-valine[c] + 1 ATP[c] + 1 a tRNAval[c] => 1 diphosphate[c] + 1 AMP[c] + 1 an L-valyl-[tRNAval][c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links




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