Difference between revisions of "CHC 645"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-HYDROXYISOBUTYRATE-DEHYDROGENASE-RXN 3-HYDROXYISOBUTYRATE-DEHYDROGENASE-RXN] == * direction: ** L...")
 
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-HYDROXYISOBUTYRATE-DEHYDROGENASE-RXN 3-HYDROXYISOBUTYRATE-DEHYDROGENASE-RXN] ==
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== Gene CHC_645 ==
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* direction:
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* common name:
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** LEFT-TO-RIGHT
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** ycf86
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/1.1.1.31 EC-1.1.1.31]
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** 91109
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* transcription direction:
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** NEGATIVE
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* right end position:
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** 91324
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* centisome position:
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** 50.591938   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[PLASTOQUINOL--PLASTOCYANIN-REDUCTASE-RXN]]
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** 1 [[CPD-12175]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[CH3-MALONATE-S-ALD]][c]
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** Source: [[annotation-original_genome]]
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* With common name(s):
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*** Assignment: automated-name-match
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** 1 (S)-3-hydroxy-isobutanoate[c] '''+''' 1 NAD+[c] '''=>''' 1 NADH[c] '''+''' 1 H+[c] '''+''' 1 (S)-methylmalonate-semialdehyde[c]
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== Pathways associated ==
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* [[PWY-101]]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[CHC_T00009349001_1]]
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** [[pantograph]]-[[a.taliana]]
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* [[CHC_T00008882001_1]]
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** [[pantograph]]-[[a.taliana]]
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* [[CHC_T00008689001_1]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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== Pathways ==
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* [[VALDEG-PWY]], L-valine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=VALDEG-PWY VALDEG-PWY]
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** '''5''' reactions found over '''8''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[galdieria.sulphuraria]]
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*** [[a.taliana]]
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== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: common name=ycf86}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02047 R02047]
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{{#set: left end position=91109}}
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* UNIPROT:
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{{#set: transcription direction=NEGATIVE}}
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** [http://www.uniprot.org/uniprot/P29266 P29266]
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{{#set: right end position=91324}}
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** [http://www.uniprot.org/uniprot/P28811 P28811]
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{{#set: centisome position=50.591938    }}
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** [http://www.uniprot.org/uniprot/Q8XAE4 Q8XAE4]
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{{#set: reaction associated=PLASTOQUINOL--PLASTOCYANIN-REDUCTASE-RXN}}
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** [http://www.uniprot.org/uniprot/Q55702 Q55702]
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{{#set: pathway associated=PWY-101}}
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** [http://www.uniprot.org/uniprot/Q9XTI0 Q9XTI0]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: ec number=EC-1.1.1.31}}
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{{#set: gene associated=CHC_T00009349001_1|CHC_T00008882001_1|CHC_T00008689001_1}}
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{{#set: in pathway=VALDEG-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=galdieria.sulphuraria|a.taliana}}
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Latest revision as of 18:47, 9 January 2019

Gene CHC_645

  • common name:
    • ycf86
  • left end position:
    • 91109
  • transcription direction:
    • NEGATIVE
  • right end position:
    • 91324
  • centisome position:
    • 50.591938
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=CHC_645&oldid=23500"