Difference between revisions of "PSII-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=THIOREDOXIN-REDUCT-NADPH-RXN THIOREDOXIN-REDUCT-NADPH-RXN] == * direction: ** LEFT-TO-RIGHT * ec nu...")
 
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=THIOREDOXIN-REDUCT-NADPH-RXN THIOREDOXIN-REDUCT-NADPH-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PSII-RXN PSII-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* common name:
 +
** photosystem II protein Y
 +
** photosystem II D2 core protein
 +
** photosystem II PsbE protein
 +
** photosystem II protein psb30
 +
** photosystem II PsbX protein
 +
** photosystem II protein L
 +
** photosystem II protein J
 +
** photosystem II protein I
 +
** photosystem II protein Z
 +
** photosystem II protein K
 +
** photosystem II D1 core protein
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.8.1.9 EC-1.8.1.9]
+
** [http://enzyme.expasy.org/EC/1.10.3.9 EC-1.10.3.9]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[Ox-Thioredoxin]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[Red-Thioredoxin]][c] '''+''' 1 [[NADP]][c]
+
** 1 [[Light]][c] '''+''' 2 [[PLASTOQUINONE]][c] '''+''' 2 [[WATER]][c] '''+''' 4 [[PROTON]][e] '''=>''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 2 [[Plastoquinols]][c] '''+''' 4 [[PROTON]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 an oxidized thioredoxin[c] '''+''' 1 NADPH[c] '''+''' 1 H+[c] '''=>''' 1 a reduced thioredoxin[c] '''+''' 1 NADP+[c]
+
** 1 hν[c] '''+''' 2 a plastoquinone[c] '''+''' 2 H2O[c] '''+''' 4 H+[e] '''=>''' 1 oxygen[c] '''+''' 2 a plastoquinol[c] '''+''' 4 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[CHC_T00001349001_1]]
+
* Gene: [[CHC_95]]
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
** Source: [[annotation-original_genome]]
−
** [[pantograph]]-[[a.taliana]]
+
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[CHC_T00009123001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
* Gene: [[CHC_205]]
 +
** Source: [[annotation-original_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[CHC_880]]
 +
** Source: [[annotation-original_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[CHC_1140]]
 +
** Source: [[annotation-original_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[CHC_1155]]
 +
** Source: [[annotation-original_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[CHC_T00008339001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
* Gene: [[CHC_615]]
 +
** Source: [[annotation-original_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[CHC_1170]]
 +
** Source: [[annotation-original_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[CHC_125]]
 +
** Source: [[annotation-original_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[CHC_1160]]
 +
** Source: [[annotation-original_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[CHC_610]]
 +
** Source: [[annotation-original_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[CHC_50]]
 +
** Source: [[annotation-original_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 
== Pathways  ==
 
== Pathways  ==
−
* [[THIOREDOX-PWY]], thioredoxin pathway: [http://metacyc.org/META/NEW-IMAGE?object=THIOREDOX-PWY THIOREDOX-PWY]
+
* [[PWY-101]], photosynthesis light reactions: [http://metacyc.org/META/NEW-IMAGE?object=PWY-101 PWY-101]
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
** '''4''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-galdieria.sulphuraria]]
−
*** [[galdieria.sulphuraria]]
+
*** Tool: [[pantograph]]
−
*** [[a.taliana]]
+
* Category: [[annotation]]
 +
** Source: [[annotation-original_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20345 20345]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30250 30250]
−
* LIGAND-RXN:
+
−
** [http://www.genome.jp/dbget-bin/www_bget?R02016 R02016]
+
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/Q05741 Q05741]
+
−
** [http://www.uniprot.org/uniprot/P56431 P56431]
+
−
** [http://www.uniprot.org/uniprot/O28718 O28718]
+
−
** [http://www.uniprot.org/uniprot/P80880 P80880]
+
−
** [http://www.uniprot.org/uniprot/P43496 P43496]
+
−
** [http://www.uniprot.org/uniprot/P94284 P94284]
+
−
** [http://www.uniprot.org/uniprot/O66790 O66790]
+
−
** [http://www.uniprot.org/uniprot/Q9PIY1 Q9PIY1]
+
−
** [http://www.uniprot.org/uniprot/P47348 P47348]
+
−
** [http://www.uniprot.org/uniprot/Q9CH02 Q9CH02]
+
−
** [http://www.uniprot.org/uniprot/Q7M0Y2 Q7M0Y2]
+
−
** [http://www.uniprot.org/uniprot/O26804 O26804]
+
−
** [http://www.uniprot.org/uniprot/Q9JU23 Q9JU23]
+
−
** [http://www.uniprot.org/uniprot/P43788 P43788]
+
−
** [http://www.uniprot.org/uniprot/Q58931 Q58931]
+
−
** [http://www.uniprot.org/uniprot/Q9CF34 Q9CF34]
+
−
** [http://www.uniprot.org/uniprot/P0A9P4 P0A9P4]
+
−
** [http://www.uniprot.org/uniprot/P23160 P23160]
+
−
** [http://www.uniprot.org/uniprot/P39916 P39916]
+
−
** [http://www.uniprot.org/uniprot/Q39242 Q39242]
+
−
** [http://www.uniprot.org/uniprot/Q39243 Q39243]
+
−
** [http://www.uniprot.org/uniprot/P38816 P38816]
+
−
** [http://www.uniprot.org/uniprot/Q25861 Q25861]
+
−
** [http://www.uniprot.org/uniprot/P29509 P29509]
+
−
** [http://www.uniprot.org/uniprot/P52213 P52213]
+
−
** [http://www.uniprot.org/uniprot/Q16881 Q16881]
+
−
** [http://www.uniprot.org/uniprot/P75531 P75531]
+
−
** [http://www.uniprot.org/uniprot/P74746 P74746]
+
−
** [http://www.uniprot.org/uniprot/P46843 P46843]
+
−
** [http://www.uniprot.org/uniprot/O54535 O54535]
+
−
** [http://www.uniprot.org/uniprot/Q39951 Q39951]
+
−
** [http://www.uniprot.org/uniprot/Q92375 Q92375]
+
−
** [http://www.uniprot.org/uniprot/P52215 P52215]
+
−
** [http://www.uniprot.org/uniprot/P51978 P51978]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: ec number=EC-1.8.1.9}}
+
{{#set: common name=photosystem II protein Y}}
−
{{#set: gene associated=CHC_T00001349001_1}}
+
{{#set: common name=photosystem II D2 core protein}}
−
{{#set: in pathway=THIOREDOX-PWY}}
+
{{#set: common name=photosystem II PsbE protein}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: common name=photosystem II protein psb30}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: common name=photosystem II PsbX protein}}
−
{{#set: reconstruction source=galdieria.sulphuraria|a.taliana}}
+
{{#set: common name=photosystem II protein L}}
 +
{{#set: common name=photosystem II protein J}}
 +
{{#set: common name=photosystem II protein I}}
 +
{{#set: common name=photosystem II protein Z}}
 +
{{#set: common name=photosystem II protein K}}
 +
{{#set: common name=photosystem II D1 core protein}}
 +
{{#set: ec number=EC-1.10.3.9}}
 +
{{#set: gene associated=CHC_95|CHC_T00009123001_1|CHC_205|CHC_880|CHC_1140|CHC_1155|CHC_T00008339001_1|CHC_615|CHC_1170|CHC_125|CHC_1160|CHC_610|CHC_50}}
 +
{{#set: in pathway=PWY-101}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=orthology-galdieria.sulphuraria|annotation-original_genome}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 17:52, 9 January 2019

Reaction PSII-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • photosystem II protein Y
    • photosystem II D2 core protein
    • photosystem II PsbE protein
    • photosystem II protein psb30
    • photosystem II PsbX protein
    • photosystem II protein L
    • photosystem II protein J
    • photosystem II protein I
    • photosystem II protein Z
    • photosystem II protein K
    • photosystem II D1 core protein
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-101, photosynthesis light reactions: PWY-101
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links










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