Difference between revisions of "RXN-7682"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=SER SER] == * smiles: ** C(O)C([N+])C(=O)[O-] * inchi key: ** InChIKey=MTCFGRXMJLQNBG-REOHCLBHS...")
 
 
(One intermediate revision by the same user not shown)
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=SER SER] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7682 RXN-7682] ==
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* smiles:
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* direction:
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** C(O)C([N+])C(=O)[O-]
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** LEFT-TO-RIGHT
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* inchi key:
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* ec number:
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** InChIKey=MTCFGRXMJLQNBG-REOHCLBHSA-N
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** [http://enzyme.expasy.org/EC/1.17.1.4 EC-1.17.1.4]
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* common name:
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** L-serine
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* molecular weight:
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** 105.093   
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* Synonym(s):
 
* Synonym(s):
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** S
 
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** serine
 
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** ser
 
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** L-ser
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[RXN-5641]]
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* With identifiers:
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* [[TRYPSYN-RXN]]
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** 1 [[HYPOXANTHINE]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[XANTHINE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[NADH]][c]
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* [[RXN0-2382]]
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* With common name(s):
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* [[SERINE--TRNA-LIGASE-RXN]]
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** 1 hypoxanthine[c] '''+''' 1 NAD+[c] '''+''' 1 H2O[c] '''=>''' 1 xanthine[c] '''+''' 1 H+[c] '''+''' 1 NADH[c]
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* [[BIOMASS-RXN]]
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* [[RXN0-2161]]
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== Genes associated with this reaction  ==
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* [[5.1.1.18-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[RXN-15125]]
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* Gene: [[CHC_T00000194001_1]]
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* [[SERINE-C-PALMITOYLTRANSFERASE-RXN]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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* [[4.3.1.17-RXN]]
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** Source: [[orthology-arabidopsis_thaliana]]
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* [[SERINE-O-ACETTRAN-RXN]]
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* Gene: [[CHC_T00006932001_1]]
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== Reaction(s) known to produce the compound ==
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** Source: [[orthology-ectocarpus_siliculosus]]
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* [[RXN-14136]]
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** Source: [[orthology-arabidopsis_thaliana]]
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* [[RXN0-5114]]
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* Gene: [[CHC_T00006216001_1]]
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== Reaction(s) of unknown directionality ==
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** Source: [[orthology-ectocarpus_siliculosus]]
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* [[GLYOHMETRANS-RXN]]
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** Source: [[orthology-arabidopsis_thaliana]]
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* [[RXN-17371]]
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== Pathways  ==
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* [[GLYOHMETRANS-RXN-SER/THF//GLY/METHYLENE-THF/WATER.33.]]
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* [[PWY-6596]], adenosine nucleotides degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6596 PWY-6596]
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* [[RXN-1382]]
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** '''6''' reactions found over '''8''' reactions in the full pathway
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* [[P164-PWY]], purine nucleobases degradation I (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=P164-PWY P164-PWY]
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** '''3''' reactions found over '''17''' reactions in the full pathway
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* [[SALVADEHYPOX-PWY]], adenosine nucleotides degradation II: [http://metacyc.org/META/NEW-IMAGE?object=SALVADEHYPOX-PWY SALVADEHYPOX-PWY]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-arabidopsis_thaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
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* CAS : 56-45-1
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* RHEA:
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* METABOLIGHTS : MTBLC33384
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24670 24670]
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* PUBCHEM:
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* LIGAND-RXN:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=6857581 6857581]
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** [http://www.genome.jp/dbget-bin/www_bget?R01768 R01768]
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* HMDB : HMDB00187
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{{#set: direction=LEFT-TO-RIGHT}}
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* LIGAND-CPD:
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{{#set: ec number=EC-1.17.1.4}}
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** [http://www.genome.jp/dbget-bin/www_bget?C00065 C00065]
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{{#set: gene associated=CHC_T00000194001_1|CHC_T00006932001_1|CHC_T00006216001_1}}
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* CHEBI:
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{{#set: in pathway=PWY-6596|P164-PWY|SALVADEHYPOX-PWY}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=33384 33384]
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{{#set: reconstruction category=orthology}}
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* BIGG : ser__L
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{{#set: reconstruction source=orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus}}
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{{#set: smiles=C(O)C([N+])C(=O)[O-]}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: inchi key=InChIKey=MTCFGRXMJLQNBG-REOHCLBHSA-N}}
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{{#set: common name=L-serine}}
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{{#set: molecular weight=105.093    }}
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{{#set: common name=S|serine|ser|L-ser}}
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{{#set: consumed by=RXN-5641|TRYPSYN-RXN|RXN0-2382|SERINE--TRNA-LIGASE-RXN|BIOMASS-RXN|RXN0-2161|5.1.1.18-RXN|RXN-15125|SERINE-C-PALMITOYLTRANSFERASE-RXN|4.3.1.17-RXN|SERINE-O-ACETTRAN-RXN}}
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{{#set: produced by=RXN-14136|RXN0-5114}}
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{{#set: consumed or produced by=GLYOHMETRANS-RXN|RXN-17371|GLYOHMETRANS-RXN-SER/THF//GLY/METHYLENE-THF/WATER.33.|RXN-1382}}
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Latest revision as of 18:00, 9 January 2019

Reaction RXN-7682

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 hypoxanthine[c] + 1 NAD+[c] + 1 H2O[c] => 1 xanthine[c] + 1 H+[c] + 1 NADH[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6596, adenosine nucleotides degradation I: PWY-6596
    • 6 reactions found over 8 reactions in the full pathway
  • P164-PWY, purine nucleobases degradation I (anaerobic): P164-PWY
    • 3 reactions found over 17 reactions in the full pathway
  • SALVADEHYPOX-PWY, adenosine nucleotides degradation II: SALVADEHYPOX-PWY
    • 4 reactions found over 5 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=RXN-7682&oldid=23769"