Difference between revisions of "METHIONINE--TRNA-LIGASE-RXN"
From metabolic_network
(Created page with "{{#ask: Category:Reaction reconstruction tool::pathwaytools | ?COMMON NAME | ?ec number | ?reconstruction category | ?reconstruction tool | ?reconstruction source | ?g...") |
|||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
− | + | [[Category:Reaction]] | |
− | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=METHIONINE--TRNA-LIGASE-RXN METHIONINE--TRNA-LIGASE-RXN] == | |
− | + | * direction: | |
− | | | + | ** LEFT-TO-RIGHT |
− | | | + | * common name: |
− | + | ** methionine--tRNA ligase, cytoplasmic | |
− | | | + | * ec number: |
− | | | + | ** [http://enzyme.expasy.org/EC/6.1.1.10 EC-6.1.1.10] |
− | }} | + | * Synonym(s): |
+ | |||
+ | == Reaction Formula == | ||
+ | * With identifiers: | ||
+ | ** 1 [[ATP]][c] '''+''' 1 [[Elongation-tRNAMet]][c] '''+''' 1 [[MET]][c] '''=>''' 1 [[Charged-MET-tRNAs]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] | ||
+ | * With common name(s): | ||
+ | ** 1 ATP[c] '''+''' 1 elongator tRNAmet[c] '''+''' 1 L-methionine[c] '''=>''' 1 an L-methionyl-[elongator tRNAmet][c] '''+''' 1 AMP[c] '''+''' 1 diphosphate[c] | ||
+ | |||
+ | == Genes associated with this reaction == | ||
+ | Genes have been associated with this reaction based on different elements listed below. | ||
+ | * Gene: [[CHC_T00007020001_1]] | ||
+ | ** Source: [[orthology-galdieria.sulphuraria]] | ||
+ | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
+ | * Gene: [[CHC_T00006241001_1]] | ||
+ | ** Source: [[orthology-galdieria.sulphuraria]] | ||
+ | * Gene: [[CHC_T00009091001]] | ||
+ | ** Source: [[annotation-original_genome]] | ||
+ | *** Assignment: AUTOMATED-NAME-MATCH | ||
+ | * Gene: [[CHC_T00009091001_1]] | ||
+ | ** Source: [[orthology-galdieria.sulphuraria]] | ||
+ | == Pathways == | ||
+ | * [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY] | ||
+ | ** '''21''' reactions found over '''21''' reactions in the full pathway | ||
+ | == Reconstruction information == | ||
+ | * Category: [[orthology]] | ||
+ | ** Source: [[orthology-galdieria.sulphuraria]] | ||
+ | *** Tool: [[pantograph]] | ||
+ | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
+ | *** Tool: [[pantograph]] | ||
+ | * Category: [[annotation]] | ||
+ | ** Source: [[annotation-original_genome]] | ||
+ | *** Tool: [[pathwaytools]] | ||
+ | == External links == | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13481 13481] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P56127 P56127] | ||
+ | ** [http://www.uniprot.org/uniprot/Q44951 Q44951] | ||
+ | ** [http://www.uniprot.org/uniprot/P47267 P47267] | ||
+ | ** [http://www.uniprot.org/uniprot/O84035 O84035] | ||
+ | ** [http://www.uniprot.org/uniprot/O28819 O28819] | ||
+ | ** [http://www.uniprot.org/uniprot/O58721 O58721] | ||
+ | ** [http://www.uniprot.org/uniprot/O83776 O83776] | ||
+ | ** [http://www.uniprot.org/uniprot/O33925 O33925] | ||
+ | ** [http://www.uniprot.org/uniprot/Q58659 Q58659] | ||
+ | ** [http://www.uniprot.org/uniprot/O66738 O66738] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9ZCP0 Q9ZCP0] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PP85 Q9PP85] | ||
+ | ** [http://www.uniprot.org/uniprot/O26687 O26687] | ||
+ | ** [http://www.uniprot.org/uniprot/O67298 O67298] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JWP0 Q9JWP0] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9ZKG9 Q9ZKG9] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9Z959 Q9Z959] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CHE0 Q9CHE0] | ||
+ | ** [http://www.uniprot.org/uniprot/P43828 P43828] | ||
+ | ** [http://www.uniprot.org/uniprot/P56192 P56192] | ||
+ | ** [http://www.uniprot.org/uniprot/Q50319 Q50319] | ||
+ | ** [http://www.uniprot.org/uniprot/P23920 P23920] | ||
+ | ** [http://www.uniprot.org/uniprot/P75091 P75091] | ||
+ | ** [http://www.uniprot.org/uniprot/Q55729 Q55729] | ||
+ | ** [http://www.uniprot.org/uniprot/P22438 P22438] | ||
+ | ** [http://www.uniprot.org/uniprot/P00958 P00958] | ||
+ | ** [http://www.uniprot.org/uniprot/P00959 P00959] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9M2T9 Q9M2T9] | ||
+ | ** [http://www.uniprot.org/uniprot/O23761 O23761] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R03659 R03659] | ||
+ | {{#set: direction=LEFT-TO-RIGHT}} | ||
+ | {{#set: common name=methionine--tRNA ligase, cytoplasmic}} | ||
+ | {{#set: ec number=EC-6.1.1.10}} | ||
+ | {{#set: gene associated=CHC_T00007020001_1|CHC_T00006241001_1|CHC_T00009091001|CHC_T00009091001_1}} | ||
+ | {{#set: in pathway=TRNA-CHARGING-PWY}} | ||
+ | {{#set: reconstruction category=orthology|annotation}} | ||
+ | {{#set: reconstruction source=orthology-galdieria.sulphuraria|annotation-original_genome|orthology-ectocarpus_siliculosus}} | ||
+ | {{#set: reconstruction tool=pantograph|pathwaytools}} |
Latest revision as of 18:02, 9 January 2019
Contents
Reaction METHIONINE--TRNA-LIGASE-RXN
- direction:
- LEFT-TO-RIGHT
- common name:
- methionine--tRNA ligase, cytoplasmic
- ec number:
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 ATP[c] + 1 Elongation-tRNAMet[c] + 1 MET[c] => 1 Charged-MET-tRNAs[c] + 1 AMP[c] + 1 PPI[c]
- With common name(s):
- 1 ATP[c] + 1 elongator tRNAmet[c] + 1 L-methionine[c] => 1 an L-methionyl-[elongator tRNAmet][c] + 1 AMP[c] + 1 diphosphate[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: CHC_T00007020001_1
- Source: orthology-galdieria.sulphuraria
- Source: orthology-ectocarpus_siliculosus
- Gene: CHC_T00006241001_1
- Source: orthology-galdieria.sulphuraria
- Gene: CHC_T00009091001
- Source: annotation-original_genome
- Assignment: AUTOMATED-NAME-MATCH
- Source: annotation-original_genome
- Gene: CHC_T00009091001_1
- Source: orthology-galdieria.sulphuraria
Pathways
- TRNA-CHARGING-PWY, tRNA charging: TRNA-CHARGING-PWY
- 21 reactions found over 21 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-galdieria.sulphuraria
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-galdieria.sulphuraria
- Category: annotation
- Source: annotation-original_genome
- Tool: pathwaytools
- Source: annotation-original_genome
External links
- RHEA:
- UNIPROT:
- LIGAND-RXN: