Difference between revisions of "RXN-17009"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=SUC SUC] == * smiles: ** C(C([O-])=O)CC([O-])=O * inchi key: ** InChIKey=KDYFGRWQOYBRFD-UHFFFAO...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=OHACYL-COA-DEHYDROG-RXN OHACYL-COA-DEHYDROG-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=SUC SUC] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=OHACYL-COA-DEHYDROG-RXN OHACYL-COA-DEHYDROG-RXN] ==
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* smiles:
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* direction:
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** C(C([O-])=O)CC([O-])=O
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** LEFT-TO-RIGHT
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* inchi key:
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* ec number:
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** InChIKey=KDYFGRWQOYBRFD-UHFFFAOYSA-L
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** [http://enzyme.expasy.org/EC/1.1.1.35 EC-1.1.1.35]
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* common name:
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** succinate
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* molecular weight:
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** 116.073   
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* Synonym(s):
 
* Synonym(s):
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** succinic acid
 
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** suc
 
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** succ
 
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** butanedioic acid
 
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** ethylenesuccinic acid
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[ExchangeDeadEnd_SUC]]
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* With identifiers:
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* [[RXN-15378]]
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** 1 [[L-3-HYDROXYACYL-COA]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[3-KETOACYL-COA]][c] '''+''' 1 [[NADH]][c]
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* [[RXN-14971]]
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* With common name(s):
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* [[SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN]]
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** 1 a (3S)-3-hydroxyacyl-CoA[c] '''+''' 1 NAD+[c] '''=>''' 1 H+[c] '''+''' 1 a 3-oxoacyl-CoA[c] '''+''' 1 NADH[c]
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== Reaction(s) known to produce the compound ==
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* [[SUCCSEMIALDDEHYDROG-RXN]]
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== Genes associated with this reaction  ==
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* [[METBALT-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[BIOMASS-RXN]]
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* [[CHC_T00008557001_1]]
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* [[ExchangeDeadEnd_SUC]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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* [[RXN0-5245]]
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* [[CHC_T00009422001_1]]
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* [[RXN0-5293]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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== Reaction(s) of unknown directionality ==
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* [[CHC_T00009349001_1]]
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* [[O-SUCCHOMOSERLYASE-RXN]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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* [[RXN-9384]]
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== Pathways  ==
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* [[SUCCCOASYN-RXN]]
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* [[PWY-5136]], fatty acid β-oxidation II (peroxisome): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5136 PWY-5136]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-7007]], methyl ketone biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7007 PWY-7007]
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** '''3''' reactions found over '''6''' reactions in the full pathway
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* [[FAO-PWY]], fatty acid β-oxidation I: [http://metacyc.org/META/NEW-IMAGE?object=FAO-PWY FAO-PWY]
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** '''7''' reactions found over '''7''' reactions in the full pathway
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* [[PWY66-391]], fatty acid β-oxidation VI (peroxisome): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-391 PWY66-391]
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** '''5''' reactions found over '''7''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
 +
** [[pantograph]]:
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*** [[galdieria.sulphuraria]]
 
== External links  ==
 
== External links  ==
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* CAS : 110-15-6
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* RHEA:
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* METABOLIGHTS : MTBLC30031
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22432 22432]
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* PUBCHEM:
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* PIR:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=160419 160419]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A39592 A39592]
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* KNAPSACK : C00001205
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A49613 A49613]
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* HMDB : HMDB00254
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A55045 A55045]
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* LIGAND-CPD:
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=DEPGC DEPGC]
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** [http://www.genome.jp/dbget-bin/www_bget?C00042 C00042]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=DWRTEP DWRTEP]
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* CHEMSPIDER:
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC4210 JC4210]
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** [http://www.chemspider.com/Chemical-Structure.140973.html 140973]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC4879 JC4879]
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* CHEBI:
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0199 JX0199]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=30031 30031]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S32607 S32607]
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* BIGG : succ
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S36678 S36678]
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{{#set: smiles=C(C([O-])=O)CC([O-])=O}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S40743 S40743]
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{{#set: inchi key=InChIKey=KDYFGRWQOYBRFD-UHFFFAOYSA-L}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S54786 S54786]
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{{#set: common name=succinate}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57651 S57651]
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{{#set: molecular weight=116.073    }}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S74114 S74114]
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{{#set: common name=succinic acid|suc|succ|butanedioic acid|ethylenesuccinic acid}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T10464 T10464]
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{{#set: consumed by=ExchangeDeadEnd_SUC|RXN-15378|RXN-14971|SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T46866 T46866]
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{{#set: produced by=SUCCSEMIALDDEHYDROG-RXN|METBALT-RXN|BIOMASS-RXN|ExchangeDeadEnd_SUC|RXN0-5245|RXN0-5293}}
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* LIGAND-RXN:
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{{#set: consumed or produced by=O-SUCCHOMOSERLYASE-RXN|RXN-9384|SUCCCOASYN-RXN}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01778 R01778]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P21177 P21177]
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** [http://www.uniprot.org/uniprot/Q08426 Q08426]
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** [http://www.uniprot.org/uniprot/Q53924 Q53924]
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** [http://www.uniprot.org/uniprot/P07896 P07896]
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** [http://www.uniprot.org/uniprot/Q61425 Q61425]
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** [http://www.uniprot.org/uniprot/Q16836 Q16836]
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** [http://www.uniprot.org/uniprot/P28793 P28793]
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** [http://www.uniprot.org/uniprot/P22414 P22414]
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** [http://www.uniprot.org/uniprot/Q7M0E0 Q7M0E0]
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** [http://www.uniprot.org/uniprot/P34439 P34439]
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** [http://www.uniprot.org/uniprot/Q01373 Q01373]
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** [http://www.uniprot.org/uniprot/P55100 P55100]
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** [http://www.uniprot.org/uniprot/Q39659 Q39659]
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** [http://www.uniprot.org/uniprot/P00348 P00348]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: ec number=EC-1.1.1.35}}
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{{#set: gene associated=CHC_T00008557001_1|CHC_T00009422001_1|CHC_T00009349001_1}}
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{{#set: in pathway=PWY-5136|PWY-7007|FAO-PWY|PWY66-391}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=galdieria.sulphuraria}}

Revision as of 10:54, 18 January 2018

Reaction OHACYL-COA-DEHYDROG-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5136, fatty acid β-oxidation II (peroxisome): PWY-5136
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-7007, methyl ketone biosynthesis (engineered): PWY-7007
    • 3 reactions found over 6 reactions in the full pathway
  • FAO-PWY, fatty acid β-oxidation I: FAO-PWY
    • 7 reactions found over 7 reactions in the full pathway
  • PWY66-391, fatty acid β-oxidation VI (peroxisome): PWY66-391
    • 5 reactions found over 7 reactions in the full pathway

Reconstruction information

External links




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