Difference between revisions of "ARGDEGRAD-PWY"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13202 RXN-13202] == * direction: ** LEFT-TO-RIGHT * common name: ** carbamoyl phosphate synthas...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-1141 RXN0-1141] == * direction: ** LEFT-TO-RIGHT * common name: ** lipoate--GcvH protein ligas...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13202 RXN-13202] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-1141 RXN0-1141] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** carbamoyl phosphate synthase small subunit
+
** lipoate--GcvH protein ligase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/6.3.4.16 EC-6.3.4.16]
+
** [http://enzyme.expasy.org/EC/6.3.1.20 EC-6.3.1.20]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[HCO3]][c] '''+''' 1 [[AMMONIUM]][c] '''+''' 2 [[ATP]][c] '''=>''' 1 [[CARBAMOYL-P]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[Pi]][c] '''+''' 2 [[ADP]][c]
+
** 1 [[Gcv-H]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[LIPOIC-ACID]][c] '''=>''' 1 [[PROTEIN-LIPOYLLYSINE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 hydrogencarbonate[c] '''+''' 1 ammonium[c] '''+''' 2 ATP[c] '''=>''' 1 carbamoyl phosphate[c] '''+''' 2 H+[c] '''+''' 1 phosphate[c] '''+''' 2 ADP[c]
+
** 1 [glycine cleavage system lipoyl-carrier protein]-L-lysine[c] '''+''' 1 ATP[c] '''+''' 1 (R)-lipoate[c] '''=>''' 1 a [glycine-cleavage complex H protein] N6-lipoyl-L-lysine[c] '''+''' 1 H+[c] '''+''' 1 AMP[c] '''+''' 1 diphosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[CHC_70]]
+
* [[CHC_T00006203001_1]]
−
** ORIGINAL_GENOME
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[CHC_T00010056001_1]]
+
−
** [[pantograph]]-[[galdieria.sulphuraria]]
+
−
* [[CHC_T00008596001_1]]
+
 
** [[pantograph]]-[[galdieria.sulphuraria]]
 
** [[pantograph]]-[[galdieria.sulphuraria]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-4984]], urea cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4984 PWY-4984]
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* [[orthology]]:
 
* [[orthology]]:
 
** [[pantograph]]:
 
** [[pantograph]]:
 
*** [[galdieria.sulphuraria]]
 
*** [[galdieria.sulphuraria]]
−
* [[annotation]]:
 
−
** [[pathwaytools]]:
 
−
*** [[original_genome]]
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10624 10624]
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18030 18030]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00149 R00149]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/O15829 O15829]
 
−
** [http://www.uniprot.org/uniprot/O15830 O15830]
 
−
** [http://www.uniprot.org/uniprot/P07756 P07756]
 
−
** [http://www.uniprot.org/uniprot/P31327 P31327]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=carbamoyl phosphate synthase small subunit}}
+
{{#set: common name=lipoate--GcvH protein ligase}}
−
{{#set: ec number=EC-6.3.4.16}}
+
{{#set: ec number=EC-6.3.1.20}}
−
{{#set: gene associated=CHC_70|CHC_T00010056001_1|CHC_T00008596001_1}}
+
{{#set: gene associated=CHC_T00006203001_1}}
−
{{#set: in pathway=PWY-4984}}
+
{{#set: in pathway=}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction source=galdieria.sulphuraria}}
 
{{#set: reconstruction source=galdieria.sulphuraria}}
−
{{#set: reconstruction category=annotation}}
 
−
{{#set: reconstruction tool=pathwaytools}}
 
−
{{#set: reconstruction source=original_genome}}
 

Revision as of 11:59, 18 January 2018

Reaction RXN0-1141

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • lipoate--GcvH protein ligase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 [glycine cleavage system lipoyl-carrier protein]-L-lysine[c] + 1 ATP[c] + 1 (R)-lipoate[c] => 1 a [glycine-cleavage complex H protein] N6-lipoyl-L-lysine[c] + 1 H+[c] + 1 AMP[c] + 1 diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=ARGDEGRAD-PWY&oldid=5837"