Difference between revisions of "CHC T00001335001 1"

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(Created page with "Category:Gene == Gene CHC_T00008789001 == * left end position: ** 22076 * transcription direction: ** POSITIVE * right end position: ** 26137 * centisome position: ** 35.9...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-150 RXN1F-150] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene CHC_T00008789001 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-150 RXN1F-150] ==
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* left end position:
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* direction:
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** 22076
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** LEFT-TO-RIGHT
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* transcription direction:
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* ec number:
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** POSITIVE
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** [http://enzyme.expasy.org/EC/5.5.1.19 EC-5.5.1.19]
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* right end position:
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** 26137
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* centisome position:
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** 35.990738   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[2.7.9.4-RXN]]
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* With identifiers:
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** original_genome
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** 1 [[CPD1F-114]][c] '''=>''' 1 [[CPD1F-126]][c]
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***automated-name-match
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* With common name(s):
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* [[RXN-12201]]
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** 1 all-trans-lycopene[c] '''=>''' 1 γ-carotene[c]
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** original_genome
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***automated-name-match
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== Genes associated with this reaction  ==
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* [[RXN-12203]]
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Genes have been associated with this reaction based on different elements listed below.
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** original_genome
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* [[CHC_T00009499001_1]]
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***automated-name-match
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** [[pantograph]]-[[a.taliana]]
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== Pathways associated ==
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* [[CHC_T00010245001_1]]
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* [[PWY-6724]]
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** [[pantograph]]-[[a.taliana]]
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* [[CHC_T00008813001_1]]
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** [[pantograph]]-[[a.taliana]]
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* [[CHC_T00008663001_1]]
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** [[pantograph]]-[[a.taliana]]
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* [[CHC_T00003979001_1]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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** [[pantograph]]-[[a.taliana]]
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* [[CHC_T00009062001_1]]
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** [[pantograph]]-[[a.taliana]]
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* [[CHC_T00010004001_1]]
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** [[pantograph]]-[[a.taliana]]
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* [[CHC_T00008616001_1]]
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** [[pantograph]]-[[a.taliana]]
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* [[CHC_T00009131001_1]]
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** [[pantograph]]-[[a.taliana]]
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* [[CHC_T00009303001_1]]
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** [[pantograph]]-[[a.taliana]]
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* [[CHC_T00009401001_1]]
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** [[pantograph]]-[[a.taliana]]
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* [[CHC_T00008672001_1]]
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** [[pantograph]]-[[a.taliana]]
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== Pathways ==
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* [[PWY-5943]], β-carotene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5943 PWY-5943]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-7591]], okenone biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7591 PWY-7591]
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** '''1''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[galdieria.sulphuraria]]
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*** [[a.taliana]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=22076}}
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* RHEA:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=32222 32222]
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{{#set: right end position=26137}}
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* LIGAND-RXN:
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{{#set: centisome position=35.990738    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R05341 R05341]
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{{#set: reaction associated=2.7.9.4-RXN|RXN-12201|RXN-12203}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: pathway associated=PWY-6724}}
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{{#set: ec number=EC-5.5.1.19}}
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{{#set: gene associated=CHC_T00009499001_1|CHC_T00010245001_1|CHC_T00008813001_1|CHC_T00008663001_1|CHC_T00003979001_1|CHC_T00009062001_1|CHC_T00010004001_1|CHC_T00008616001_1|CHC_T00009131001_1|CHC_T00009303001_1|CHC_T00009401001_1|CHC_T00008672001_1}}
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{{#set: in pathway=PWY-5943|PWY-7591}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=galdieria.sulphuraria|a.taliana}}

Revision as of 12:09, 18 January 2018

Reaction RXN1F-150

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 all-trans-lycopene[c] => 1 γ-carotene[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5943, β-carotene biosynthesis: PWY-5943
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-7591, okenone biosynthesis: PWY-7591
    • 1 reactions found over 6 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=CHC_T00001335001_1&oldid=6670"