Difference between revisions of "CHC T00001373001 1"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2161 RXN0-2161] == * direction: ** LEFT-TO-RIGHT * common name: ** serine--tRNA ligase, cytopl...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13303 RXN-13303] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2161 RXN0-2161] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13303 RXN-13303] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** serine--tRNA ligase, cytoplasmic
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/6.1.1.11 EC-6.1.1.11]
+
** [http://enzyme.expasy.org/EC/4.2.1.134 EC-4.2.1.134]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ATP]][c] '''+''' 1 [[tRNA-Sec]][c] '''+''' 1 [[SER]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[L-seryl-SEC-tRNAs]][c] '''+''' 1 [[AMP]][c]
+
** 1 [[CPD-14276]][c] '''=>''' 1 [[CPD-14281]][c] '''+''' 1 [[WATER]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 ATP[c] '''+''' 1 a tRNAsec[c] '''+''' 1 L-serine[c] '''=>''' 1 diphosphate[c] '''+''' 1 an L-seryl-[tRNAsec][c] '''+''' 1 AMP[c]
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** 1 (3R)-3-hydroxy-behenoyl-CoA[c] '''=>''' 1 trans-docos-2-enoyl-CoA[c] '''+''' 1 H2O[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[CHC_T00009366001_1]]
 
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** [[pantograph]]-[[galdieria.sulphuraria]]
 
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* [[CHC_T00009407001]]
 
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** ORIGINAL_GENOME
 
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***AUTOMATED-NAME-MATCH
 
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* [[CHC_T00009407001_1]]
 
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** [[pantograph]]-[[galdieria.sulphuraria]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY0-901]], L-selenocysteine biosynthesis I (bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-901 PWY0-901]
+
* [[PWY-7036]], very long chain fatty acid biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7036 PWY-7036]
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
** '''8''' reactions found over '''16''' reactions in the full pathway
−
* [[PWY-6281]], L-selenocysteine biosynthesis II (archaea and eukaryotes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6281 PWY-6281]
+
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
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* [[gap-filling]]:
−
** [[pantograph]]:
+
** [[meneco]]:
−
*** [[galdieria.sulphuraria]]
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*** [[added for gapfilling]]
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[original_genome]]
+
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R08218 R08218]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=serine--tRNA ligase, cytoplasmic}}
+
{{#set: ec number=EC-4.2.1.134}}
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{{#set: ec number=EC-6.1.1.11}}
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{{#set: in pathway=PWY-7036}}
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{{#set: gene associated=CHC_T00009366001_1|CHC_T00009407001|CHC_T00009407001_1}}
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{{#set: reconstruction category=gap-filling}}
−
{{#set: in pathway=PWY0-901|PWY-6281}}
+
{{#set: reconstruction tool=meneco}}
−
{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=added for gapfilling}}
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=galdieria.sulphuraria}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=original_genome}}
+

Revision as of 12:15, 18 January 2018

Reaction RXN-13303

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 (3R)-3-hydroxy-behenoyl-CoA[c] => 1 trans-docos-2-enoyl-CoA[c] + 1 H2O[c]

Genes associated with this reaction

Pathways

  • PWY-7036, very long chain fatty acid biosynthesis II: PWY-7036
    • 8 reactions found over 16 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=CHC_T00001373001_1&oldid=7196"