Difference between revisions of "CHC T00009531001"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-10284 CPD-10284] == * smiles: ** CCCCCCCCCCCC(=O)CC(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2161 RXN0-2161] == * direction: ** LEFT-TO-RIGHT * common name: ** serine--tRNA ligase, cytopl...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-10284 CPD-10284] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2161 RXN0-2161] ==
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* smiles:
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* direction:
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** CCCCCCCCCCCC(=O)CC(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(OP(=O)(OCC1(C(OP([O-])(=O)[O-])C(O)C(O1)N3(C2(=C(C(N)=NC=N2)N=C3))))[O-])[O-]
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=IQNFBGHLIVBNOU-QSGBVPJFSA-J
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* common name:
 
* common name:
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** 3-oxo-myristoyl-CoA
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** serine--tRNA ligase, cytoplasmic
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* molecular weight:
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* ec number:
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** 987.845   
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** [http://enzyme.expasy.org/EC/6.1.1.11 EC-6.1.1.11]
 
* Synonym(s):
 
* Synonym(s):
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** 3-oxotetradecanoyl-CoA
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[RXN-14268]]
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[ATP]][c] '''+''' 1 [[tRNA-Sec]][c] '''+''' 1 [[SER]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[L-seryl-SEC-tRNAs]][c] '''+''' 1 [[AMP]][c]
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* [[RXN-12507]]
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* With common name(s):
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== Reaction(s) of unknown directionality ==
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** 1 ATP[c] '''+''' 1 a tRNAsec[c] '''+''' 1 L-serine[c] '''=>''' 1 diphosphate[c] '''+''' 1 an L-seryl-[tRNAsec][c] '''+''' 1 AMP[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[CHC_T00009366001_1]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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* [[CHC_T00009407001]]
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** ORIGINAL_GENOME
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***AUTOMATED-NAME-MATCH
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* [[CHC_T00009407001_1]]
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** [[pantograph]]-[[galdieria.sulphuraria]]
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== Pathways  ==
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* [[PWY0-901]], L-selenocysteine biosynthesis I (bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-901 PWY0-901]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-6281]], L-selenocysteine biosynthesis II (archaea and eukaryotes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6281 PWY-6281]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[galdieria.sulphuraria]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[original_genome]]
 
== External links  ==
 
== External links  ==
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* LIGAND-CPD:
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?C05261 C05261]
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** [http://www.genome.jp/dbget-bin/www_bget?R08218 R08218]
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* CHEBI:
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{{#set: direction=LEFT-TO-RIGHT}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=62543 62543]
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{{#set: common name=serine--tRNA ligase, cytoplasmic}}
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* BIGG : 3otdcoa
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{{#set: ec number=EC-6.1.1.11}}
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* PUBCHEM:
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{{#set: gene associated=CHC_T00009366001_1|CHC_T00009407001|CHC_T00009407001_1}}
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=25245316 25245316]
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{{#set: in pathway=PWY0-901|PWY-6281}}
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* HMDB : HMDB03935
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{{#set: reconstruction category=orthology}}
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{{#set: smiles=CCCCCCCCCCCC(=O)CC(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(OP(=O)(OCC1(C(OP([O-])(=O)[O-])C(O)C(O1)N3(C2(=C(C(N)=NC=N2)N=C3))))[O-])[O-]}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: inchi key=InChIKey=IQNFBGHLIVBNOU-QSGBVPJFSA-J}}
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{{#set: reconstruction source=galdieria.sulphuraria}}
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{{#set: common name=3-oxo-myristoyl-CoA}}
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{{#set: reconstruction category=annotation}}
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{{#set: molecular weight=987.845    }}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: common name=3-oxotetradecanoyl-CoA}}
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{{#set: reconstruction source=original_genome}}
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{{#set: consumed by=RXN-14268}}
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{{#set: produced by=RXN-12507}}
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Revision as of 11:16, 18 January 2018

Reaction RXN0-2161

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • serine--tRNA ligase, cytoplasmic
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 a tRNAsec[c] + 1 L-serine[c] => 1 diphosphate[c] + 1 an L-seryl-[tRNAsec][c] + 1 AMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY0-901, L-selenocysteine biosynthesis I (bacteria): PWY0-901
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-6281, L-selenocysteine biosynthesis II (archaea and eukaryotes): PWY-6281
    • 2 reactions found over 4 reactions in the full pathway

Reconstruction information

External links






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