Difference between revisions of "CPD-294"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.8.1.6-RXN 2.8.1.6-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** biotin synthetase * ec...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FPPSYN-RXN FPPSYN-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/E...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.8.1.6-RXN 2.8.1.6-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=FPPSYN-RXN FPPSYN-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** biotin synthetase
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.8.1.6 EC-2.8.1.6]
+
** [http://enzyme.expasy.org/EC/2.5.1.10 EC-2.5.1.10]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 2 [[Reduced-2Fe-2S-Ferredoxins]][c] '''+''' 1 [[DETHIOBIOTIN]][c] '''+''' 1 [[Sulfurated-Sulfur-Acceptors]][c] '''+''' 2 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 2 [[CH33ADO]][c] '''+''' 2 [[Oxidized-2Fe-2S-Ferredoxins]][c] '''+''' 1 [[Unsulfurated-Sulfur-Acceptors]][c] '''+''' 1 [[BIOTIN]][c] '''+''' 2 [[MET]][c]
+
** 1 [[DELTA3-ISOPENTENYL-PP]][c] '''+''' 1 [[GERANYL-PP]][c] '''=>''' 1 [[FARNESYL-PP]][c] '''+''' 1 [[PPI]][c]
 
* With common name(s):
 
* With common name(s):
−
** 2 a reduced [2Fe-2S] ferredoxin[c] '''+''' 1 dethiobiotin[c] '''+''' 1 a sulfurated [sulfur carrier][c] '''+''' 2 S-adenosyl-L-methionine[c] '''=>''' 2 5'-deoxyadenosine[c] '''+''' 2 an oxidized [2Fe-2S] ferredoxin[c] '''+''' 1 an unsulfurated [sulfur carrier][c] '''+''' 1 biotin[c] '''+''' 2 L-methionine[c]
+
** 1 isopentenyl diphosphate[c] '''+''' 1 geranyl diphosphate[c] '''=>''' 1 (2E,6E)-farnesyl diphosphate[c] '''+''' 1 diphosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[CHC_T00009361001]]
+
* [[CHC_T00006851001_1]]
−
** ORIGINAL_GENOME
+
** [[pantograph]]-[[a.taliana]]
−
***AUTOMATED-NAME-MATCH
+
* [[CHC_T00002324001_1]]
−
* [[CHC_T00009361001_1]]
+
 
** [[pantograph]]-[[galdieria.sulphuraria]]
 
** [[pantograph]]-[[galdieria.sulphuraria]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY0-1507]], biotin biosynthesis from 8-amino-7-oxononanoate I: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1507 PWY0-1507]
+
* [[PWY-7736]], stellatic acid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7736 PWY-7736]
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
** '''3''' reactions found over '''8''' reactions in the full pathway
−
* [[PWY-7380]], biotin biosynthesis from 8-amino-7-oxononanoate II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7380 PWY-7380]
+
* [[PWY-6859]], all-trans-farnesol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6859 PWY-6859]
−
** '''1''' reactions found over '''3''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5123]], trans, trans-farnesyl diphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5123 PWY-5123]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7721]], methyl phomopsenoate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7721 PWY-7721]
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7102]], bisabolene biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7102 PWY-7102]
 +
** '''3''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* [[orthology]]:
 
* [[orthology]]:
 
** [[pantograph]]:
 
** [[pantograph]]:
 
*** [[galdieria.sulphuraria]]
 
*** [[galdieria.sulphuraria]]
−
* [[annotation]]:
+
*** [[a.taliana]]
−
** [[pathwaytools]]:
+
−
*** [[original_genome]]
+
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22060 22060]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19361 19361]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01078 R01078]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02003 R02003]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q9JRW7 Q9JRW7]
+
** [http://www.uniprot.org/uniprot/P08524 P08524]
−
** [http://www.uniprot.org/uniprot/Q9PLZ3 Q9PLZ3]
+
** [http://www.uniprot.org/uniprot/P05369 P05369]
−
** [http://www.uniprot.org/uniprot/P53557 P53557]
+
** [http://www.uniprot.org/uniprot/P14324 P14324]
−
** [http://www.uniprot.org/uniprot/O67104 O67104]
+
** [http://www.uniprot.org/uniprot/Q9CH81 Q9CH81]
−
** [http://www.uniprot.org/uniprot/P44987 P44987]
+
** [http://www.uniprot.org/uniprot/Q9PM32 Q9PM32]
−
** [http://www.uniprot.org/uniprot/Q58692 Q58692]
+
** [http://www.uniprot.org/uniprot/P45204 P45204]
−
** [http://www.uniprot.org/uniprot/P0A506 P0A506]
+
** [http://www.uniprot.org/uniprot/Q9JSM0 Q9JSM0]
−
** [http://www.uniprot.org/uniprot/Q9Z6L5 Q9Z6L5]
+
** [http://www.uniprot.org/uniprot/P49350 P49350]
−
** [http://www.uniprot.org/uniprot/Q9JUE3 Q9JUE3]
+
** [http://www.uniprot.org/uniprot/P22939 P22939]
−
** [http://www.uniprot.org/uniprot/P46396 P46396]
+
** [http://www.uniprot.org/uniprot/Q08291 Q08291]
−
** [http://www.uniprot.org/uniprot/Q47862 Q47862]
+
** [http://www.uniprot.org/uniprot/P49349 P49349]
−
** [http://www.uniprot.org/uniprot/P19206 P19206]
+
** [http://www.uniprot.org/uniprot/Q09152 Q09152]
−
** [http://www.uniprot.org/uniprot/P32451 P32451]
+
** [http://www.uniprot.org/uniprot/P49351 P49351]
−
** [http://www.uniprot.org/uniprot/P54967 P54967]
+
** [http://www.uniprot.org/uniprot/P49352 P49352]
−
** [http://www.uniprot.org/uniprot/P46715 P46715]
+
** [http://www.uniprot.org/uniprot/Q43315 Q43315]
−
** [http://www.uniprot.org/uniprot/P73538 P73538]
+
** [http://www.uniprot.org/uniprot/O24241 O24241]
−
** [http://www.uniprot.org/uniprot/P12996 P12996]
+
** [http://www.uniprot.org/uniprot/O24242 O24242]
−
** [http://www.uniprot.org/uniprot/O59778 O59778]
+
** [http://www.uniprot.org/uniprot/Q92334 Q92334]
 +
** [http://www.uniprot.org/uniprot/Q92218 Q92218]
 +
** [http://www.uniprot.org/uniprot/Q92235 Q92235]
 +
** [http://www.uniprot.org/uniprot/Q92250 Q92250]
 +
** [http://www.uniprot.org/uniprot/Q8L7F4 Q8L7F4]
 +
** [http://www.uniprot.org/uniprot/P49353 P49353]
 +
** [http://www.uniprot.org/uniprot/O04882 O04882]
 +
** [http://www.uniprot.org/uniprot/O65004 O65004]
 +
** [http://www.uniprot.org/uniprot/O14230 O14230]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=biotin synthetase}}
+
{{#set: ec number=EC-2.5.1.10}}
−
{{#set: ec number=EC-2.8.1.6}}
+
{{#set: gene associated=CHC_T00006851001_1|CHC_T00002324001_1}}
−
{{#set: gene associated=CHC_T00009361001|CHC_T00009361001_1}}
+
{{#set: in pathway=PWY-7736|PWY-6859|PWY-5123|PWY-7721|PWY-7102}}
−
{{#set: in pathway=PWY0-1507|PWY-7380}}
+
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=galdieria.sulphuraria}}
+
{{#set: reconstruction source=galdieria.sulphuraria|a.taliana}}
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=original_genome}}
+

Revision as of 12:31, 18 January 2018

Reaction FPPSYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 isopentenyl diphosphate[c] + 1 geranyl diphosphate[c] => 1 (2E,6E)-farnesyl diphosphate[c] + 1 diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7736, stellatic acid biosynthesis: PWY-7736
    • 3 reactions found over 8 reactions in the full pathway
  • PWY-6859, all-trans-farnesol biosynthesis: PWY-6859
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-5123, trans, trans-farnesyl diphosphate biosynthesis: PWY-5123
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-7721, methyl phomopsenoate biosynthesis: PWY-7721
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-7102, bisabolene biosynthesis (engineered): PWY-7102
    • 3 reactions found over 6 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=CPD-294&oldid=8460"