Difference between revisions of "ISOCITDEH-RXN"

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(Created page with "Category:Gene == Gene CHC_T00008882001_1 == * Synonym(s): == Reactions associated == * 3-HYDROXYISOBUTYRATE-DEHYDROGENASE-RXN ** pantograph-a.taliana * METH...")
 
 
(One intermediate revision by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene CHC_T00008882001_1 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ISOCITDEH-RXN ISOCITDEH-RXN] ==
 +
* direction:
 +
** REVERSIBLE
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/1.1.1.42 EC-1.1.1.42]
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reactions associated ==
+
== Reaction Formula ==
−
* [[3-HYDROXYISOBUTYRATE-DEHYDROGENASE-RXN]]
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* With identifiers:
−
** [[pantograph]]-[[a.taliana]]
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** 1 [[NADP]][c] '''+''' 1 [[THREO-DS-ISO-CITRATE]][c] '''<=>''' 1 [[NADPH]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
−
* [[METHYLACYLYLCOA-HYDROXY-RXN]]
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* With common name(s):
−
** [[pantograph]]-[[a.taliana]]
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** 1 NADP+[c] '''+''' 1 D-threo-isocitrate[c] '''<=>''' 1 NADPH[c] '''+''' 1 2-oxoglutarate[c] '''+''' 1 CO2[c]
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* [[RXN-11662]]
+
 
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** [[pantograph]]-[[a.taliana]]
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== Genes associated with this reaction  ==
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* [[RXN-11667]]
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Genes have been associated with this reaction based on different elements listed below.
−
** [[pantograph]]-[[a.taliana]]
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* Gene: [[CHC_T00009580001_1]]
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* [[RXN-12490]]
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** Source: [[orthology-galdieria.sulphuraria]]
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** [[pantograph]]-[[a.taliana]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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* [[RXN-12507]]
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== Pathways  ==
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** [[pantograph]]-[[a.taliana]]
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* [[FERMENTATION-PWY]], mixed acid fermentation: [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY]
−
* [[RXN-12570]]
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** '''11''' reactions found over '''16''' reactions in the full pathway
−
** [[pantograph]]-[[a.taliana]]
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* [[PWY-7254]], TCA cycle VII (acetate-producers): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7254 PWY-7254]
−
* [[RXN-14271]]
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** '''7''' reactions found over '''9''' reactions in the full pathway
−
** [[pantograph]]-[[a.taliana]]
+
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY]
−
* [[RXN-2425]]
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** '''8''' reactions found over '''11''' reactions in the full pathway
−
** [[pantograph]]-[[a.taliana]]
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* [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913]
−
* [[RXN-6383]]
+
** '''10''' reactions found over '''11''' reactions in the full pathway
−
** [[pantograph]]-[[a.taliana]]
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* [[TCA]], TCA cycle I (prokaryotic): [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA]
−
* [[TIGLYLCOA-HYDROXY-RXN]]
+
** '''9''' reactions found over '''10''' reactions in the full pathway
−
** [[pantograph]]-[[a.taliana]]
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* [[P23-PWY]], reductive TCA cycle I: [http://metacyc.org/META/NEW-IMAGE?object=P23-PWY P23-PWY]
−
== Pathways associated ==
+
** '''10''' reactions found over '''12''' reactions in the full pathway
−
* [[P162-PWY]]
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* [[REDCITCYC]], TCA cycle VIII (helicobacter): [http://metacyc.org/META/NEW-IMAGE?object=REDCITCYC REDCITCYC]
−
* [[PWY-5177]]
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** '''5''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-6583]]
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* [[PWY-6549]], L-glutamine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6549 PWY-6549]
−
* [[VALDEG-PWY]]
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** '''9''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-6883]]
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* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
−
* [[PWY-7778]]
+
** '''8''' reactions found over '''12''' reactions in the full pathway
−
* [[PWY-7779]]
+
* [[PWY-7268]], NAD/NADP-NADH/NADPH cytosolic interconversion (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7268 PWY-7268]
−
* [[PWY-7574]]
+
** '''3''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-7094]]
+
* [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
−
* [[PWY-7654]]
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** '''9''' reactions found over '''19''' reactions in the full pathway
−
* [[P3-PWY]]
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* [[PWY-7124]], ethylene biosynthesis V (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7124 PWY-7124]
−
* [[PWY-7656]]
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** '''8''' reactions found over '''10''' reactions in the full pathway
−
* [[PWY-5789]]
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== Reconstruction information  ==
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* [[CENTFERM-PWY]]
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* Category: [[orthology]]
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* [[PWY0-321]]
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** Source: [[orthology-galdieria.sulphuraria]]
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* [[PWY-5743]]
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*** Tool: [[pantograph]]
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* [[PWY-5744]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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* [[ILEUDEG-PWY]]
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*** Tool: [[pantograph]]
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* [[PWY-7216]]
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−
* [[PWY-1361]]
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−
* [[PWY-5109]]
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−
* [[PWY-7401]]
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−
* [[PWY-6863]]
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−
* [[PWY-3941]]
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== External links  ==
 
== External links  ==
−
{{#set: reaction associated=3-HYDROXYISOBUTYRATE-DEHYDROGENASE-RXN|METHYLACYLYLCOA-HYDROXY-RXN|RXN-11662|RXN-11667|RXN-12490|RXN-12507|RXN-12570|RXN-14271|RXN-2425|RXN-6383|TIGLYLCOA-HYDROXY-RXN}}
+
* LIGAND-RXN:
−
{{#set: pathway associated=P162-PWY|PWY-5177|PWY-6583|VALDEG-PWY|PWY-6883|PWY-7778|PWY-7779|PWY-7574|PWY-7094|PWY-7654|P3-PWY|PWY-7656|PWY-5789|CENTFERM-PWY|PWY0-321|PWY-5743|PWY-5744|ILEUDEG-PWY|PWY-7216|PWY-1361|PWY-5109|PWY-7401|PWY-6863|PWY-3941}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00267 R00267]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P16100 P16100]
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** [http://www.uniprot.org/uniprot/P33198 P33198]
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** [http://www.uniprot.org/uniprot/P41561 P41561]
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** [http://www.uniprot.org/uniprot/P41562 P41562]
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** [http://www.uniprot.org/uniprot/P50214 P50214]
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** [http://www.uniprot.org/uniprot/P41560 P41560]
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** [http://www.uniprot.org/uniprot/P56063 P56063]
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** [http://www.uniprot.org/uniprot/Q9PHY3 Q9PHY3]
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** [http://www.uniprot.org/uniprot/P21954 P21954]
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** [http://www.uniprot.org/uniprot/P08200 P08200]
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** [http://www.uniprot.org/uniprot/O29610 O29610]
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** [http://www.uniprot.org/uniprot/Q9JUV7 Q9JUV7]
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** [http://www.uniprot.org/uniprot/Q9CHQ4 Q9CHQ4]
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** [http://www.uniprot.org/uniprot/P39126 P39126]
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** [http://www.uniprot.org/uniprot/P50216 P50216]
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** [http://www.uniprot.org/uniprot/P50215 P50215]
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** [http://www.uniprot.org/uniprot/Q04467 Q04467]
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** [http://www.uniprot.org/uniprot/P50217 P50217]
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** [http://www.uniprot.org/uniprot/P41939 P41939]
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** [http://www.uniprot.org/uniprot/P48735 P48735]
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** [http://www.uniprot.org/uniprot/P53982 P53982]
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** [http://www.uniprot.org/uniprot/P50218 P50218]
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** [http://www.uniprot.org/uniprot/O65853 O65853]
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** [http://www.uniprot.org/uniprot/Q40345 Q40345]
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** [http://www.uniprot.org/uniprot/O14254 O14254]
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** [http://www.uniprot.org/uniprot/O75874 O75874]
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* PIR:
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A10759 A10759]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A43294 A43294]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A43934 A43934]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A49341 A49341]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A54756 A54756]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A55591 A55591]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B49341 B49341]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C64523 C64523]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C81399 C81399]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=DCBYIS DCBYIS]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=DCECIS DCECIS]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G69330 G69330]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H64389 H64389]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H81877 H81877]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H86708 H86708]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40382 I40382]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40719 I40719]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC4600 JC4600]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S28423 S28423]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S33612 S33612]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S33859 S33859]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S47013 S47013]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S51419 S51419]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57499 S57499]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S62921 S62921]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S65065 S65065]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S74684 S74684]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04355 T04355]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04356 T04356]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07402 T07402]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T09619 T09619]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T39058 T39058]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T44658 T44658]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T46280 T46280]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: ec number=EC-1.1.1.42}}
 +
{{#set: gene associated=CHC_T00009580001_1}}
 +
{{#set: in pathway=FERMENTATION-PWY|PWY-7254|P105-PWY|PWY-5913|TCA|P23-PWY|REDCITCYC|PWY-6549|PWY-6969|PWY-7268|PWY-6728|PWY-7124}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-galdieria.sulphuraria|orthology-ectocarpus_siliculosus}}
 +
{{#set: reconstruction tool=pantograph}}

Latest revision as of 18:38, 9 January 2019

Reaction ISOCITDEH-RXN

  • direction:
    • REVERSIBLE
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • FERMENTATION-PWY, mixed acid fermentation: FERMENTATION-PWY
    • 11 reactions found over 16 reactions in the full pathway
  • PWY-7254, TCA cycle VII (acetate-producers): PWY-7254
    • 7 reactions found over 9 reactions in the full pathway
  • P105-PWY, TCA cycle IV (2-oxoglutarate decarboxylase): P105-PWY
    • 8 reactions found over 11 reactions in the full pathway
  • PWY-5913, partial TCA cycle (obligate autotrophs): PWY-5913
    • 10 reactions found over 11 reactions in the full pathway
  • TCA, TCA cycle I (prokaryotic): TCA
    • 9 reactions found over 10 reactions in the full pathway
  • P23-PWY, reductive TCA cycle I: P23-PWY
    • 10 reactions found over 12 reactions in the full pathway
  • REDCITCYC, TCA cycle VIII (helicobacter): REDCITCYC
    • 5 reactions found over 9 reactions in the full pathway
  • PWY-6549, L-glutamine biosynthesis III: PWY-6549
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-6969, TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): PWY-6969
    • 8 reactions found over 12 reactions in the full pathway
  • PWY-7268, NAD/NADP-NADH/NADPH cytosolic interconversion (yeast): PWY-7268
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-6728, methylaspartate cycle: PWY-6728
    • 9 reactions found over 19 reactions in the full pathway
  • PWY-7124, ethylene biosynthesis V (engineered): PWY-7124
    • 8 reactions found over 10 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=ISOCITDEH-RXN&oldid=23319"