Difference between revisions of "RXN-16637"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=R163-RXN R163-RXN] == * direction: ** REVERSIBLE * Synonym(s): == Reaction Formula == * With ident...") |
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[[Category:Reaction]] | [[Category:Reaction]] | ||
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object= | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16637 RXN-16637] == |
* direction: | * direction: | ||
| − | ** | + | ** LEFT-TO-RIGHT |
| + | * common name: | ||
| + | ** Peptidyl-tRNA hydrolase 2, mitochondrial | ||
| + | * ec number: | ||
| + | ** [http://enzyme.expasy.org/EC/3.1.1.29 EC-3.1.1.29] | ||
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
| − | ** 1 [[WATER]][c] '''+''' 1 [[ | + | ** 1 [[WATER]][c] '''+''' 1 [[Charged-CYS-tRNAs]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[CYS]][c] '''+''' 1 [[CYS-tRNAs]][c] |
* With common name(s): | * With common name(s): | ||
| − | ** 1 H2O[c] '''+''' 1 | + | ** 1 H2O[c] '''+''' 1 an L-cysteinyl-[tRNAcys][c] '''=>''' 1 H+[c] '''+''' 1 L-cysteine[c] '''+''' 1 a tRNAcys[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
| − | * [[ | + | * Gene: [[CHC_T00008495001_1]] |
| − | ** [[ | + | ** Source: [[orthology-galdieria.sulphuraria]] |
| − | * [[ | + | ** Source: [[orthology-ectocarpus_siliculosus]] |
| − | ** [[ | + | * Gene: [[CHC_T00008495001]] |
| + | ** Source: [[annotation-original_genome]] | ||
| + | *** Assignment: AUTOMATED-NAME-MATCH | ||
| + | * Gene: [[CHC_T00006238001_1]] | ||
| + | ** Source: [[orthology-galdieria.sulphuraria]] | ||
== Pathways == | == Pathways == | ||
| + | * [[PWY-6308]], L-cysteine biosynthesis II (tRNA-dependent): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6308 PWY-6308] | ||
| + | ** '''1''' reactions found over '''3''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
| − | * [[orthology]]: | + | * Category: [[orthology]] |
| − | ** [[pantograph]]: | + | ** Source: [[orthology-galdieria.sulphuraria]] |
| − | *** [[ | + | *** Tool: [[pantograph]] |
| + | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
| + | *** Tool: [[pantograph]] | ||
| + | * Category: [[annotation]] | ||
| + | ** Source: [[annotation-original_genome]] | ||
| + | *** Tool: [[pathwaytools]] | ||
== External links == | == External links == | ||
| − | + | {{#set: direction=LEFT-TO-RIGHT}} | |
| − | + | {{#set: common name=Peptidyl-tRNA hydrolase 2, mitochondrial}} | |
| − | {{#set: | + | {{#set: ec number=EC-3.1.1.29}} |
| − | {{#set: gene associated= | + | {{#set: gene associated=CHC_T00008495001_1|CHC_T00008495001|CHC_T00006238001_1}} |
| − | {{#set: in pathway=}} | + | {{#set: in pathway=PWY-6308}} |
| − | {{#set: reconstruction category=orthology}} | + | {{#set: reconstruction category=orthology|annotation}} |
| − | {{#set: reconstruction | + | {{#set: reconstruction source=orthology-galdieria.sulphuraria|annotation-original_genome|orthology-ectocarpus_siliculosus}} |
| − | {{#set: reconstruction | + | {{#set: reconstruction tool=pantograph|pathwaytools}} |
Latest revision as of 18:38, 9 January 2019
Contents
Reaction RXN-16637
- direction:
- LEFT-TO-RIGHT
- common name:
- Peptidyl-tRNA hydrolase 2, mitochondrial
- ec number:
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 WATER[c] + 1 Charged-CYS-tRNAs[c] => 1 PROTON[c] + 1 CYS[c] + 1 CYS-tRNAs[c]
- With common name(s):
- 1 H2O[c] + 1 an L-cysteinyl-[tRNAcys][c] => 1 H+[c] + 1 L-cysteine[c] + 1 a tRNAcys[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: CHC_T00008495001_1
- Source: orthology-galdieria.sulphuraria
- Source: orthology-ectocarpus_siliculosus
- Gene: CHC_T00008495001
- Source: annotation-original_genome
- Assignment: AUTOMATED-NAME-MATCH
- Source: annotation-original_genome
- Gene: CHC_T00006238001_1
- Source: orthology-galdieria.sulphuraria
Pathways
- PWY-6308, L-cysteine biosynthesis II (tRNA-dependent): PWY-6308
- 1 reactions found over 3 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-galdieria.sulphuraria
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-galdieria.sulphuraria
- Category: annotation
- Source: annotation-original_genome
- Tool: pathwaytools
- Source: annotation-original_genome
