Difference between revisions of "RXN1F-20"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=Reduced-ferredoxins Reduced-ferredoxins] == * common name: ** a reduced ferredoxin [iron-sulfur...")
 
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
−
[[Category:Metabolite]]
+
[[Category:Reaction]]
−
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=Reduced-ferredoxins Reduced-ferredoxins] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-20 RXN1F-20] ==
 +
* direction:
 +
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** a reduced ferredoxin [iron-sulfur] cluster
+
** magnesium chelatase subunit H
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/6.6.1.1 EC-6.6.1.1]
 
* Synonym(s):
 
* Synonym(s):
−
** a reduced ferredoxin
 
  
−
== Reaction(s) known to consume the compound ==
+
== Reaction Formula ==
−
* [[FERREDOXIN--NITRITE-REDUCTASE-RXN]]
+
* With identifiers:
−
* [[1.3.7.4-RXN]]
+
** 1 [[MG+2]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[PROTOPORPHYRIN_IX]][c] '''=>''' 1 [[MG-PROTOPORPHYRIN]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[ADP]][c] '''+''' 3 [[PROTON]][c]
−
* [[1.3.7.3-RXN]]
+
* With common name(s):
−
* [[1.3.7.2-RXN]]
+
** 1 Mg2+[c] '''+''' 1 ATP[c] '''+''' 1 H2O[c] '''+''' 1 protoporphyrin IX[c] '''=>''' 1 Mg-protoporphyrin[c] '''+''' 1 phosphate[c] '''+''' 1 ADP[c] '''+''' 3 H+[c]
−
* [[RXN-9944]]
+
 
−
* [[SULFITE-REDUCTASE-FERREDOXIN-RXN]]
+
== Genes associated with this reaction  ==
−
* [[RXN0-882]]
+
Genes have been associated with this reaction based on different elements listed below.
−
* [[ISPH2-RXN]]
+
* Gene: [[CHC_T00008422001]]
−
* [[GLUTAMATE-SYNTHASE-FERREDOXIN-RXN]]
+
** Source: [[annotation-original_genome]]
−
* [[1.18.1.2-RXN]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[RXN0-884]]
+
* Gene: [[CHC_T00008032001_1]]
−
== Reaction(s) known to produce the compound ==
+
** Source: [[orthology-galdieria.sulphuraria]]
−
* [[RXN-12878]]
+
* Gene: [[CHC_T00000990001_1]]
−
* [[RXN-15479]]
+
** Source: [[orthology-ectocarpus_siliculosus]]
−
* [[RXN-15468]]
+
* Gene: [[CHC_T00008429001_1]]
−
* [[RXN-17897]]
+
** Source: [[orthology-galdieria.sulphuraria]]
−
== Reaction(s) of unknown directionality ==
+
** Source: [[orthology-ectocarpus_siliculosus]]
−
* [[HYDROG-RXN]]
+
** Source: [[orthology-arabidopsis_thaliana]]
 +
* Gene: [[CHC_T00008422001_1]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
** Source: [[orthology-arabidopsis_thaliana]]
 +
== Pathways  ==
 +
* [[PWY-5531]], 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5531 PWY-5531]
 +
** '''3''' reactions found over '''9''' reactions in the full pathway
 +
* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): [http://metacyc.org/META/NEW-IMAGE?object=CHLOROPHYLL-SYN CHLOROPHYLL-SYN]
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7159 PWY-7159]
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-arabidopsis_thaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-original_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: common name=a reduced ferredoxin [iron-sulfur] cluster}}
+
* RHEA:
−
{{#set: common name=a reduced ferredoxin}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13961 13961]
−
{{#set: consumed by=FERREDOXIN--NITRITE-REDUCTASE-RXN|1.3.7.4-RXN|1.3.7.3-RXN|1.3.7.2-RXN|RXN-9944|SULFITE-REDUCTASE-FERREDOXIN-RXN|RXN0-882|ISPH2-RXN|GLUTAMATE-SYNTHASE-FERREDOXIN-RXN|1.18.1.2-RXN|RXN0-884}}
+
* LIGAND-RXN:
−
{{#set: produced by=RXN-12878|RXN-15479|RXN-15468|RXN-17897}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R03877 R03877]
−
{{#set: consumed or produced by=HYDROG-RXN}}
+
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=magnesium chelatase subunit H}}
 +
{{#set: ec number=EC-6.6.1.1}}
 +
{{#set: gene associated=CHC_T00008422001|CHC_T00008032001_1|CHC_T00000990001_1|CHC_T00008429001_1|CHC_T00008422001_1}}
 +
{{#set: in pathway=PWY-5531|CHLOROPHYLL-SYN|PWY-7159}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=orthology-galdieria.sulphuraria|annotation-original_genome|orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 18:40, 9 January 2019

Reaction RXN1F-20

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • magnesium chelatase subunit H
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5531, 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic): PWY-5531
    • 3 reactions found over 9 reactions in the full pathway
  • CHLOROPHYLL-SYN, 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): CHLOROPHYLL-SYN
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-7159, 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): PWY-7159
    • 8 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=RXN1F-20&oldid=23379"