Difference between revisions of "ATPSYN-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-7005 CPD-7005] == * smiles: ** C=CC2(=C(C)C5(=CC1(C(C)C(CCC(=O)OCC=C(C)CCC=C(C)CCC=C(C)CCC=...")
 
 
(One intermediate revision by the same user not shown)
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-7005 CPD-7005] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ATPSYN-RXN ATPSYN-RXN] ==
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* smiles:
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* direction:
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** C=CC2(=C(C)C5(=CC1(C(C)C(CCC(=O)OCC=C(C)CCC=C(C)CCC=C(C)CCC=C(C)C)C(N=1)=C7([C-](C(OC)=O)C(=O)C6(C(C)=C4(N([Mg]N(C2=CC3(C(C)=C(CC)C(N=3)=C4))5)C=67))))))
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** REVERSIBLE
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* inchi key:
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** InChIKey=QBLSEPRESQJTCI-ZNLWZYPOSA-M
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* common name:
 
* common name:
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** geranylgeranyl chlorophyll a
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** V-type ATP synthase, Subunit G
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* molecular weight:
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** Vacuolar-type H+-ATPase, V1A subunit
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** 886.447   
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** V-type ATP synthase, Subunit V1C
 +
** ATP synthase subunit alpha, mitochondrial
 +
** ATP synthase delta chain
 +
** ATP synthase epsilon chain
 +
** putative ATP synthase protein
 +
* ec number:
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** [http://enzyme.expasy.org/EC/3.6.3.14 EC-3.6.3.14]
 
* Synonym(s):
 
* Synonym(s):
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** geranylgeranyl-chl a
 
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** GG-chl a
 
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** GG-chlorophyll a
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[RXN-7664]]
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* With identifiers:
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* [[RXN-17428]]
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** 4 [[PROTON]][e] '''+''' 1 [[ADP]][c] '''+''' 1 [[Pi]][c] '''<=>''' 1 [[WATER]][c] '''+''' 1 [[ATP]][c] '''+''' 3 [[PROTON]][c]
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== Reaction(s) known to produce the compound ==
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* With common name(s):
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* [[RXN-7663]]
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** 4 H+[e] '''+''' 1 ADP[c] '''+''' 1 phosphate[c] '''<=>''' 1 H2O[c] '''+''' 1 ATP[c] '''+''' 3 H+[c]
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== Reaction(s) of unknown directionality ==
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 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[CHC_T00010175001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
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* Gene: [[CHC_T00009194001]]
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** Source: [[annotation-original_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[CHC_T00010194001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
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* Gene: [[CHC_T00009073001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
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* Gene: [[CHC_T00006891001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
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* Gene: [[CHC_T00010260001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
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* Gene: [[CHC_T00005903001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
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* Gene: [[CHC_T00010194001]]
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** Source: [[annotation-original_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[CHC_T00006782001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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* Gene: [[CHC_T00010260001]]
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** Source: [[annotation-original_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[CHC_T00005827001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
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* Gene: [[CHC_T00008719001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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* Gene: [[CHC_T00007788001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
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* Gene: [[CHC_T00010124001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
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* Gene: [[CHC_T00004901001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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* Gene: [[CHC_T00010146001]]
 +
** Source: [[annotation-original_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[CHC_T00008404001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
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* Gene: [[CHC_T00010053001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
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* Gene: [[CHC_840]]
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** Source: [[annotation-original_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[CHC_T00005161001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
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* Gene: [[CHC_T00006181001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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* Gene: [[CHC_T00006631001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
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* Gene: [[CHC_T00009194001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
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* Gene: [[CHC_760]]
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** Source: [[annotation-original_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
 +
== Pathways  ==
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* [[PWY-7219]], adenosine ribonucleotides de novo biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7219 PWY-7219]
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** '''4''' reactions found over '''4''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
*** Tool: [[pantograph]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-original_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* PUBCHEM:
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* RHEA:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=90657538 90657538]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20852 20852]
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* CHEBI:
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{{#set: direction=REVERSIBLE}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=64668 64668]
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{{#set: common name=V-type ATP synthase, Subunit G}}
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{{#set: smiles=C=CC2(=C(C)C5(=CC1(C(C)C(CCC(=O)OCC=C(C)CCC=C(C)CCC=C(C)CCC=C(C)C)C(N=1)=C7([C-](C(OC)=O)C(=O)C6(C(C)=C4(N([Mg]N(C2=CC3(C(C)=C(CC)C(N=3)=C4))5)C=67))))))}}
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{{#set: common name=Vacuolar-type H+-ATPase, V1A subunit}}
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{{#set: inchi key=InChIKey=QBLSEPRESQJTCI-ZNLWZYPOSA-M}}
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{{#set: common name=V-type ATP synthase, Subunit V1C}}
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{{#set: common name=geranylgeranyl chlorophyll a}}
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{{#set: common name=ATP synthase subunit alpha, mitochondrial}}
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{{#set: molecular weight=886.447    }}
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{{#set: common name=ATP synthase delta chain}}
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{{#set: common name=geranylgeranyl-chl a|GG-chl a|GG-chlorophyll a}}
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{{#set: common name=ATP synthase epsilon chain}}
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{{#set: consumed by=RXN-7664|RXN-17428}}
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{{#set: common name=putative ATP synthase protein}}
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{{#set: produced by=RXN-7663}}
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{{#set: ec number=EC-3.6.3.14}}
 +
{{#set: gene associated=CHC_T00010175001_1|CHC_T00009194001|CHC_T00010194001_1|CHC_T00009073001_1|CHC_T00006891001_1|CHC_T00010260001_1|CHC_T00005903001_1|CHC_T00010194001|CHC_T00006782001_1|CHC_T00010260001|CHC_T00005827001_1|CHC_T00008719001_1|CHC_T00007788001_1|CHC_T00010124001_1|CHC_T00004901001_1|CHC_T00010146001|CHC_T00008404001_1|CHC_T00010053001_1|CHC_840|CHC_T00005161001_1|CHC_T00006181001_1|CHC_T00006631001_1|CHC_T00009194001_1|CHC_760}}
 +
{{#set: in pathway=PWY-7219}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=orthology-galdieria.sulphuraria|annotation-original_genome|orthology-ectocarpus_siliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 18:57, 9 January 2019

Reaction ATPSYN-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • V-type ATP synthase, Subunit G
    • Vacuolar-type H+-ATPase, V1A subunit
    • V-type ATP synthase, Subunit V1C
    • ATP synthase subunit alpha, mitochondrial
    • ATP synthase delta chain
    • ATP synthase epsilon chain
    • putative ATP synthase protein
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 4 H+[e] + 1 ADP[c] + 1 phosphate[c] <=> 1 H2O[c] + 1 ATP[c] + 3 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7219, adenosine ribonucleotides de novo biosynthesis: PWY-7219
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links








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