Difference between revisions of "PYRAMKIN-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FATTY-ACID-SYNTHASE-RXN FATTY-ACID-SYNTHASE-RXN] == * direction: ** REVERSIBLE * ec number: ** [htt...")
 
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=FATTY-ACID-SYNTHASE-RXN FATTY-ACID-SYNTHASE-RXN] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRAMKIN-RXN PYRAMKIN-RXN] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
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** LEFT-TO-RIGHT
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
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** [http://enzyme.expasy.org/EC/2.7.1.35 EC-2.7.1.35]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 2n [[NADPH]][c] '''+''' 2n [[PROTON]][c] '''+''' n [[MALONYL-COA]][c] '''+''' 1 [[ACETYL-COA]][c] '''<=>''' 2n [[NADP]][c] '''+''' 1 [[Long-Chain-Fatty-Acids]][c] '''+''' (n+1) [[CO-A]][c] '''+''' n [[CARBON-DIOXIDE]][c]
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** 1 [[PYRIDOXAMINE]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[PYRIDOXAMINE-5P]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c]
 
* With common name(s):
 
* With common name(s):
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** 2n NADPH[c] '''+''' 2n H+[c] '''+''' n malonyl-CoA[c] '''+''' 1 acetyl-CoA[c] '''<=>''' 2n NADP+[c] '''+''' 1 a long-chain fatty acid[c] '''+''' (n+1) coenzyme A[c] '''+''' n CO2[c]
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** 1 pyridoxamine[c] '''+''' 1 ATP[c] '''=>''' 1 pyridoxamine 5'-phosphate[c] '''+''' 1 ADP[c] '''+''' 1 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[CHC_T00004634001_1]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
** Source: [[orthology-arabidopsis_thaliana]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PLPSAL-PWY]], pyridoxal 5'-phosphate salvage I: [http://metacyc.org/META/NEW-IMAGE?object=PLPSAL-PWY PLPSAL-PWY]
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7204]], pyridoxal 5'-phosphate salvage II (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7204 PWY-7204]
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[gap-filling]]:
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* Category: [[orthology]]
−
** [[meneco]]:
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** Source: [[orthology-arabidopsis_thaliana]]
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*** [[added for gapfilling]]
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*** Tool: [[pantograph]]
 +
** Source: [[orthology-ectocarpus_siliculosus]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25104 25104]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R05188 R05188]
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** [http://www.genome.jp/dbget-bin/www_bget?R02493 R02493]
−
* UNIPROT:
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{{#set: direction=LEFT-TO-RIGHT}}
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** [http://www.uniprot.org/uniprot/P36189 P36189]
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{{#set: ec number=EC-2.7.1.35}}
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** [http://www.uniprot.org/uniprot/P49327 P49327]
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{{#set: gene associated=CHC_T00004634001_1}}
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** [http://www.uniprot.org/uniprot/P95029 P95029]
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{{#set: in pathway=PLPSAL-PWY|PWY-7204}}
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** [http://www.uniprot.org/uniprot/P43098 P43098]
+
{{#set: reconstruction category=orthology}}
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** [http://www.uniprot.org/uniprot/Q48926 Q48926]
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{{#set: reconstruction source=orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus}}
−
** [http://www.uniprot.org/uniprot/P15368 P15368]
+
{{#set: reconstruction tool=pantograph}}
−
** [http://www.uniprot.org/uniprot/P08757 P08757]
+
−
** [http://www.uniprot.org/uniprot/P07855 P07855]
+
−
** [http://www.uniprot.org/uniprot/Q04846 Q04846]
+
−
** [http://www.uniprot.org/uniprot/Q59497 Q59497]
+
−
** [http://www.uniprot.org/uniprot/P19097 P19097]
+
−
** [http://www.uniprot.org/uniprot/P78866 P78866]
+
−
** [http://www.uniprot.org/uniprot/Q10289 Q10289]
+
−
** [http://www.uniprot.org/uniprot/P12276 P12276]
+
−
** [http://www.uniprot.org/uniprot/P12785 P12785]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: ec number=EC-2.3.1.85}}
+
−
{{#set: in pathway=}}
+
−
{{#set: reconstruction category=gap-filling}}
+
−
{{#set: reconstruction tool=meneco}}
+
−
{{#set: reconstruction source=added for gapfilling}}
+

Latest revision as of 18:59, 9 January 2019

Reaction PYRAMKIN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 pyridoxamine[c] + 1 ATP[c] => 1 pyridoxamine 5'-phosphate[c] + 1 ADP[c] + 1 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PLPSAL-PWY, pyridoxal 5'-phosphate salvage I: PLPSAL-PWY
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-7204, pyridoxal 5'-phosphate salvage II (plants): PWY-7204
    • 8 reactions found over 9 reactions in the full pathway

Reconstruction information

External links




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