Difference between revisions of "RXN-5861"

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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=P181-PWY P181-PWY] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5861 RXN-5861] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-201174 TAX-201174]
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** LEFT-TO-RIGHT
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* common name:
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** nicotine degradation I (pyridine pathway)
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''1''' reactions found over '''17''' reactions in the full pathway
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* With identifiers:
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* [[SUCCSEMIALDDEHYDROG-RXN]]
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** 1 [[OXYGEN-MOLECULE]][c] '''+''' 2 [[TYR]][c] '''=>''' 2 [[L-DIHYDROXY-PHENYLALANINE]][c]
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== Reaction(s) not found ==
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* With common name(s):
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* [http://metacyc.org/META/NEW-IMAGE?object=1.14.13.10-RXN 1.14.13.10-RXN]
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** 1 oxygen[c] '''+''' 2 L-tyrosine[c] '''=>''' 2 L-dopa[c]
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* [http://metacyc.org/META/NEW-IMAGE?object=GABATRANSAM-RXN GABATRANSAM-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=NICOTINE-DEHYDROGENASE-RXN NICOTINE-DEHYDROGENASE-RXN]
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== Genes associated with this reaction  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=R161-RXN R161-RXN]
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Genes have been associated with this reaction based on different elements listed below.
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* [http://metacyc.org/META/NEW-IMAGE?object=R162-RXN R162-RXN]
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* Gene: [[CHC_T00005217001_1]]
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* [http://metacyc.org/META/NEW-IMAGE?object=R181-RXN R181-RXN]
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** Source: [[orthology-galdieria.sulphuraria]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-13065 RXN-13065]
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** Source: [[orthology-ectocarpus_siliculosus]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-13067 RXN-13067]
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== Pathways  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-13068 RXN-13068]
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* [[PWY-5399]], betacyanin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5399 PWY-5399]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-13069 RXN-13069]
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** '''2''' reactions found over '''8''' reactions in the full pathway
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-13070 RXN-13070]
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* [[PWY-3581]], (S)-reticuline biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3581 PWY-3581]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-13071 RXN-13071]
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** '''2''' reactions found over '''11''' reactions in the full pathway
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-13072 RXN-13072]
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* [[PWY-6955]], lincomycin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6955 PWY-6955]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16526 RXN-16526]
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** '''1''' reactions found over '''8''' reactions in the full pathway
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16527 RXN-16527]
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* [[PWY-6133]], (S)-reticuline biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6133 PWY-6133]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16528 RXN-16528]
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** '''1''' reactions found over '''7''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-galdieria.sulphuraria]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
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* UM-BBD-PWY : nic
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* RHEA:
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{{#set: taxonomic range=TAX-201174}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=34283 34283]
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{{#set: common name=nicotine degradation I (pyridine pathway)}}
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* LIGAND-RXN:
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{{#set: reaction found=1}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00731 R00731]
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{{#set: reaction not found=17}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00031 R00031]
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{{#set: completion rate=6.0}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: gene associated=CHC_T00005217001_1}}
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{{#set: in pathway=PWY-5399|PWY-3581|PWY-6955|PWY-6133}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-galdieria.sulphuraria|orthology-ectocarpus_siliculosus}}
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{{#set: reconstruction tool=pantograph}}

Latest revision as of 15:04, 9 January 2019

Reaction RXN-5861

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5399, betacyanin biosynthesis: PWY-5399
    • 2 reactions found over 8 reactions in the full pathway
  • PWY-3581, (S)-reticuline biosynthesis I: PWY-3581
    • 2 reactions found over 11 reactions in the full pathway
  • PWY-6955, lincomycin biosynthesis: PWY-6955
    • 1 reactions found over 8 reactions in the full pathway
  • PWY-6133, (S)-reticuline biosynthesis II: PWY-6133
    • 1 reactions found over 7 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=RXN-5861&oldid=19785"