Difference between revisions of "RXN-16380"

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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5940 PWY-5940] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16380 RXN-16380] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-201174 TAX-201174]
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
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** streptomycin biosynthesis
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** long-chain-fatty-acid-CoA ligase
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* ec number:
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** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''2''' reactions found over '''18''' reactions in the full pathway
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* With identifiers:
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* [[MYO-INOSITOL-2-DEHYDROGENASE-RXN]]
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** 1 [[CO-A]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[STEARIC_ACID]][c] '''=>''' 1 [[STEAROYL-COA]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c]
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* [[PHOSPHOGLUCMUT-RXN]]
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* With common name(s):
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== Reaction(s) not found ==
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** 1 coenzyme A[c] '''+''' 1 ATP[c] '''+''' 1 stearate[c] '''=>''' 1 stearoyl-CoA[c] '''+''' 1 diphosphate[c] '''+''' 1 AMP[c]
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* [http://metacyc.org/META/NEW-IMAGE?object=2.1.4.2-RXN 2.1.4.2-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=2.4.2.27-RXN 2.4.2.27-RXN]
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== Genes associated with this reaction  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=2.6.1.50-RXN 2.6.1.50-RXN]
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Genes have been associated with this reaction based on different elements listed below.
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* [http://metacyc.org/META/NEW-IMAGE?object=2.6.1.56-RXN 2.6.1.56-RXN]
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* Gene: [[CHC_T00009428001_1]]
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* [http://metacyc.org/META/NEW-IMAGE?object=2.7.7.33-RXN 2.7.7.33-RXN]
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** Source: [[orthology-galdieria.sulphuraria]]
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* [http://metacyc.org/META/NEW-IMAGE?object=3.1.3.40-RXN 3.1.3.40-RXN]
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** Source: [[orthology-ectocarpus_siliculosus]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11097 RXN-11097]
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* Gene: [[CHC_T00008500001_1]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11098 RXN-11098]
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** Source: [[orthology-galdieria.sulphuraria]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11099 RXN-11099]
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** Source: [[orthology-ectocarpus_siliculosus]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9467 RXN-9467]
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* Gene: [[CHC_T00008160001_1]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9469 RXN-9469]
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** Source: [[orthology-galdieria.sulphuraria]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9470 RXN-9470]
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* Gene: [[CHC_T00009428001]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9471 RXN-9471]
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** Source: [[annotation-original_genome]]
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* [http://metacyc.org/META/NEW-IMAGE?object=SCYLLO-INOSAMINE-KINASE-RXN SCYLLO-INOSAMINE-KINASE-RXN]
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*** Assignment: AUTOMATED-NAME-MATCH
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* [http://metacyc.org/META/NEW-IMAGE?object=STREPTOMYCIN-6-KINASE-RXN STREPTOMYCIN-6-KINASE-RXN]
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* Gene: [[CHC_T00008811001]]
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* [http://metacyc.org/META/NEW-IMAGE?object=STREPTOMYCIN-6-PHOSPHATASE-RXN STREPTOMYCIN-6-PHOSPHATASE-RXN]
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** Source: [[annotation-original_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[CHC_T00008811001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
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== Pathways  ==
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* [[PWY-5989]], stearate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5989 PWY-5989]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-galdieria.sulphuraria]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-original_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* LIGAND-MAP:
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{{#set: direction=LEFT-TO-RIGHT}}
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** [http://www.genome.jp/dbget-bin/www_bget?map00521 map00521]
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{{#set: common name=long-chain-fatty-acid-CoA ligase}}
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{{#set: taxonomic range=TAX-201174}}
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{{#set: ec number=EC-6.2.1.3}}
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{{#set: common name=streptomycin biosynthesis}}
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{{#set: gene associated=CHC_T00009428001_1|CHC_T00008500001_1|CHC_T00008160001_1|CHC_T00009428001|CHC_T00008811001|CHC_T00008811001_1}}
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{{#set: reaction found=2}}
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{{#set: in pathway=PWY-5989}}
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{{#set: reaction not found=18}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: completion rate=11.0}}
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{{#set: reconstruction source=orthology-galdieria.sulphuraria|annotation-original_genome|orthology-ectocarpus_siliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 15:41, 9 January 2019

Reaction RXN-16380

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • long-chain-fatty-acid-CoA ligase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 coenzyme A[c] + 1 ATP[c] + 1 stearate[c] => 1 stearoyl-CoA[c] + 1 diphosphate[c] + 1 AMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5989, stearate biosynthesis II (bacteria and plants): PWY-5989
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=RXN-16380&oldid=20673"