Difference between revisions of "R223-RXN"

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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=R223-RXN R223-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
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** formaldehyde assimilation III (dihydroxyacetone cycle)
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** octanoyl-CoA ligase
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** long-chain-fatty-acid-CoA ligase
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* ec number:
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** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
 
* Synonym(s):
 
* Synonym(s):
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** dihydroxyacetone cycle
 
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** xylulose-monophosphate cycle
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''10''' reactions found over '''12''' reactions in the full pathway
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* With identifiers:
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* [[1TRANSKETO-RXN]]
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** 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[CPD-195]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[CPD-196]][c]
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* [[2TRANSKETO-RXN]]
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* With common name(s):
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* [[F16ALDOLASE-RXN]]
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** 1 ATP[c] '''+''' 1 coenzyme A[c] '''+''' 1 octanoate[c] '''=>''' 1 AMP[c] '''+''' 1 diphosphate[c] '''+''' 1 octanoyl-CoA[c]
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* [[F16BDEPHOS-RXN]]
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* [[GAPOXNPHOSPHN-RXN]]
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== Genes associated with this reaction  ==
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* [[PHOSGLYPHOS-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[RIB5PISOM-RXN]]
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* Gene: [[CHC_T00008160001_1]]
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* [[RIBULP3EPIM-RXN]]
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** Source: [[orthology-galdieria.sulphuraria]]
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* [[TRANSALDOL-RXN]]
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* Gene: [[CHC_T00008811001]]
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* [[TRIOSEPISOMERIZATION-RXN]]
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** Source: [[annotation-original_genome]]
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== Reaction(s) not found ==
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*** Assignment: AUTOMATED-NAME-MATCH
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* [http://metacyc.org/META/NEW-IMAGE?object=FORMALDEHYDE-TRANSKETOLASE-RXN FORMALDEHYDE-TRANSKETOLASE-RXN]
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* Gene: [[CHC_T00009428001_1]]
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* [http://metacyc.org/META/NEW-IMAGE?object=GLYCERONE-KINASE-RXN GLYCERONE-KINASE-RXN]
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** Source: [[orthology-galdieria.sulphuraria]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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* Gene: [[CHC_T00009428001]]
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** Source: [[annotation-original_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[CHC_T00008500001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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* Gene: [[CHC_T00008811001_1]]
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** Source: [[orthology-galdieria.sulphuraria]]
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== Pathways  ==
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* [[P221-PWY]], octane oxidation: [http://metacyc.org/META/NEW-IMAGE?object=P221-PWY P221-PWY]
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** '''3''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-6920]], 6-gingerol analog biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6920 PWY-6920]
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** '''3''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-galdieria.sulphuraria]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-ectocarpus_siliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-original_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-4751}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=formaldehyde assimilation III (dihydroxyacetone cycle)}}
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{{#set: common name=octanoyl-CoA ligase}}
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{{#set: common name=dihydroxyacetone cycle|xylulose-monophosphate cycle}}
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{{#set: common name=long-chain-fatty-acid-CoA ligase}}
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{{#set: reaction found=10}}
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{{#set: ec number=EC-6.2.1.3}}
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{{#set: reaction not found=12}}
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{{#set: gene associated=CHC_T00008160001_1|CHC_T00008811001|CHC_T00009428001_1|CHC_T00009428001|CHC_T00008500001_1|CHC_T00008811001_1}}
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{{#set: completion rate=83.0}}
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{{#set: in pathway=P221-PWY|PWY-6920}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=orthology-galdieria.sulphuraria|annotation-original_genome|orthology-ectocarpus_siliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 15:44, 9 January 2019

Reaction R223-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • octanoyl-CoA ligase
    • long-chain-fatty-acid-CoA ligase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 coenzyme A[c] + 1 octanoate[c] => 1 AMP[c] + 1 diphosphate[c] + 1 octanoyl-CoA[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • P221-PWY, octane oxidation: P221-PWY
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-6920, 6-gingerol analog biosynthesis (engineered): PWY-6920
    • 3 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=R223-RXN&oldid=20754"