Difference between revisions of "Biomass rxn"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=UNDECAPRENYL-DIPHOSPHATASE-RXN UNDECAPRENYL-DIPHOSPHATASE-RXN] == * direction: ** LEFT-TO-RIGHT * e...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=biomass_rxn biomass_rxn] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == * W...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=UNDECAPRENYL-DIPHOSPHATASE-RXN UNDECAPRENYL-DIPHOSPHATASE-RXN] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=biomass_rxn biomass_rxn] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
* ec number:
 
** [http://enzyme.expasy.org/EC/3.6.1.27 EC-3.6.1.27]
 
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
** 1 [[UNDECAPRENYL-DIPHOSPHATE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[CPD-9646]][c] '''+''' 1 [[Pi]][c]
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** 2.375 [[GLYCEROL]][c] '''+''' 0.3 [[CYS]][c] '''+''' 0.123 [[GLYCERATE]][c] '''+''' 26.6 [[L-ALPHA-ALANINE]][c] '''+''' 0.85 [[VAL]][c] '''+''' 0.1 [[ARG]][c] '''+''' 10.7 [[GLN]][c] '''+''' 0.878 [[SUC]][c] '''+''' 0.01 [[4-AMINO-BUTYRATE]][c] '''+''' 3.35 [[SER]][c] '''+''' 3.8 [[GLY]][c] '''+''' 0.115 [[TRP]][c] '''+''' 0.125 [[TYR]][c] '''+''' 0.65 [[THR]][c] '''+''' 0.029 [[GLYCOLLATE]][c] '''+''' 331.4 [[MANNITOL]][c] '''+''' 1.35 [[PRO]][c] '''+''' 18.85 [[GLT]][c] '''+''' 0.35 [[LYS]][c] '''+''' 0.75 [[ASN]][c] '''+''' 0.3 [[MET]][c] '''+''' 9.37 [[THREO-DS-ISO-CITRATE]][c] '''+''' 0.1 [[L-ORNITHINE]][c] '''+''' 0.35 [[PHE]][c] '''+''' 2.7615 [[GLC]][c] '''+''' 0.1 [[HIS]][c] '''+''' 12.5 [[L-ASPARTATE]][c] '''+''' 19.3055 [[CIT]][c] '''+''' 0.3 [[LEU]][c] '''+''' 0.2 [[ILE]][c] '''=>''' 1 [[BIOMASS]][c]
 
* With common name(s):
 
* With common name(s):
** 1 di-trans,octa-cis-undecaprenyl diphosphate[c] '''+''' 1 H2O[c] '''=>''' 1 H+[c] '''+''' 1 di-trans,octa-cis-undecaprenyl phosphate[c] '''+''' 1 phosphate[c]
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**
 
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== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
Genes have been associated with this reaction based on different elements listed below.
 
* [[CHC_T00000153001_1]]
 
** [[pantograph]]-[[galdieria.sulphuraria]]
 
* [[CHC_T00003933001_1]]
 
** [[pantograph]]-[[galdieria.sulphuraria]]
 
 
== Pathways  ==
 
== Pathways  ==
* [[PWY-5785]], di-trans,poly-cis-undecaprenyl phosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5785 PWY-5785]
 
** '''2''' reactions found over '''2''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* [[orthology]]:
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* Category: [[manual]]
** [[pantograph]]:
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** Source: [[manual-biomass_reaction]]
*** [[galdieria.sulphuraria]]
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*** Comment: [[forfba]]
 
== External links  ==
 
== External links  ==
* RHEA:
 
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28094 28094]
 
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R05627 R05627]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
{{#set: ec number=EC-3.6.1.27}}
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{{#set: in pathway=}}
{{#set: gene associated=CHC_T00000153001_1|CHC_T00003933001_1}}
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{{#set: reconstruction category=manual}}
{{#set: in pathway=PWY-5785}}
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{{#set: reconstruction source=manual-biomass_reaction}}
{{#set: reconstruction category=orthology}}
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{{#set: reconstruction comment=forfba}}
{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=galdieria.sulphuraria}}
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Latest revision as of 16:11, 23 May 2018

Reaction biomass_rxn

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Pathways

Reconstruction information

External links