Difference between revisions of "PWY-5913"

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(Created page with "Category:Gene == Gene CHC_T00008752001 == * left end position: ** 24505 * transcription direction: ** NEGATIVE * right end position: ** 25662 * centisome position: ** 59.3...")
 
 
(2 intermediate revisions by the same user not shown)
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[[Category:Gene]]
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[[Category:Pathway]]
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== Gene CHC_T00008752001 ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913] ==
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* left end position:
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* common name:
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** 24505
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** partial TCA cycle (obligate autotrophs)
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* transcription direction:
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* taxonomic range:
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** NEGATIVE
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1118 TAX-1118]
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* right end position:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1217 TAX-1217]
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** 25662
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1224 TAX-1224]
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* centisome position:
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** 59.30255   
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* Synonym(s):
 
* Synonym(s):
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** TCA cycle VI (obligate autotrophs)
  
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== Reactions associated ==
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== Reaction(s) found ==
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* [[2.7.12.2-RXN]]
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'''10''' reactions found over '''11''' reactions in the full pathway
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** original_genome
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* [[ACONITATEDEHYDR-RXN]]
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***automated-name-match
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** 3 associated gene(s):
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* [[RXN-16317]]
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*** [[CHC_T00009087001_1]]
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** original_genome
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*** [[CHC_T00008781001_1]]
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***automated-name-match
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*** [[CHC_T00008781001]]
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== Pathways associated ==
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** 3 reconstruction source(s) associated:
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*** [[orthology-galdieria.sulphuraria]]
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*** [[annotation-original_genome]]
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*** [[orthology-ectocarpus_siliculosus]]
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* [[ACONITATEHYDR-RXN]]
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** 3 associated gene(s):
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*** [[CHC_T00009087001_1]]
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*** [[CHC_T00008781001]]
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*** [[CHC_T00008781001_1]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-galdieria.sulphuraria]]
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*** [[annotation-original_genome]]
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*** [[orthology-ectocarpus_siliculosus]]
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* [[ASPAMINOTRANS-RXN]]
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** 8 associated gene(s):
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*** [[CHC_T00010017001]]
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*** [[CHC_T00005085001_1]]
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*** [[CHC_T00008432001]]
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*** [[CHC_T00006498001_1]]
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*** [[CHC_T00009477001]]
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*** [[CHC_T00003344001_1]]
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*** [[CHC_T00009477001_1]]
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*** [[CHC_T00010197001]]
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** 4 reconstruction source(s) associated:
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*** [[orthology-galdieria.sulphuraria]]
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*** [[annotation-original_genome]]
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*** [[orthology-arabidopsis_thaliana]]
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*** [[orthology-ectocarpus_siliculosus]]
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* [[CITSYN-RXN]]
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** 1 associated gene(s):
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*** [[CHC_T00007817001_1]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-galdieria.sulphuraria]]
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* [[FUMHYDR-RXN]]
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** 2 associated gene(s):
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*** [[CHC_T00008951001_1]]
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*** [[CHC_T00008951001]]
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** 4 reconstruction source(s) associated:
 +
*** [[orthology-galdieria.sulphuraria]]
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*** [[annotation-original_genome]]
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*** [[orthology-arabidopsis_thaliana]]
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*** [[orthology-ectocarpus_siliculosus]]
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* [[GLUTDEHYD-RXN]]
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** 2 associated gene(s):
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*** [[CHC_T00010235001]]
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*** [[CHC_T00010235001_1]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-galdieria.sulphuraria]]
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*** [[annotation-original_genome]]
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*** [[orthology-ectocarpus_siliculosus]]
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* [[ISOCITDEH-RXN]]
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** 1 associated gene(s):
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*** [[CHC_T00009580001_1]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-galdieria.sulphuraria]]
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*** [[orthology-ectocarpus_siliculosus]]
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* [[MALATE-DEH-RXN]]
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** 6 associated gene(s):
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*** [[CHC_T00009292001_1]]
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*** [[CHC_T00008733001_1]]
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*** [[CHC_T00008600001_1]]
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*** [[CHC_T00008733001]]
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*** [[CHC_T00009350001_1]]
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*** [[CHC_T00009173001_1]]
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** 4 reconstruction source(s) associated:
 +
*** [[orthology-galdieria.sulphuraria]]
 +
*** [[annotation-original_genome]]
 +
*** [[orthology-arabidopsis_thaliana]]
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*** [[orthology-ectocarpus_siliculosus]]
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* [[PEPCARBOX-RXN]]
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** 1 associated gene(s):
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*** [[CHC_T00008437001_1]]
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** 2 reconstruction source(s) associated:
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*** [[orthology-galdieria.sulphuraria]]
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*** [[orthology-ectocarpus_siliculosus]]
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* [[SUCCCOASYN-RXN]]
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** 2 associated gene(s):
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*** [[CHC_T00009212001_1]]
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*** [[CHC_T00008602001_1]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-galdieria.sulphuraria]]
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*** [[orthology-arabidopsis_thaliana]]
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*** [[orthology-ectocarpus_siliculosus]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-14970 RXN-14970]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=24505}}
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{{#set: common name=partial TCA cycle (obligate autotrophs)}}
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{{#set: transcription direction=NEGATIVE}}
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{{#set: taxonomic range=TAX-1118}}
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{{#set: right end position=25662}}
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{{#set: taxonomic range=TAX-1217}}
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{{#set: centisome position=59.30255    }}
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{{#set: taxonomic range=TAX-1224}}
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{{#set: reaction associated=2.7.12.2-RXN|RXN-16317}}
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{{#set: common name=TCA cycle VI (obligate autotrophs)}}
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{{#set: reaction found=10}}
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{{#set: total reaction=11}}
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{{#set: completion rate=91.0}}

Latest revision as of 14:59, 9 January 2019

Pathway PWY-5913

  • common name:
    • partial TCA cycle (obligate autotrophs)
  • taxonomic range:
  • Synonym(s):
    • TCA cycle VI (obligate autotrophs)

Reaction(s) found

10 reactions found over 11 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=PWY-5913&oldid=19660"