Difference between revisions of "RXN0-2381"
From metabolic_network
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-15317 CPD-15317] == * common name: ** D-ribofuranose 5-phosphate * Synonym(s): == Reaction...") |
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− | [[Category: | + | [[Category:Reaction]] |
− | == | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2381 RXN0-2381] == |
+ | * direction: | ||
+ | ** REVERSIBLE | ||
* common name: | * common name: | ||
− | ** | + | ** tryptophan synthase alpha chain |
+ | ** Tryptophan synthase subunit beta | ||
+ | * ec number: | ||
+ | ** [http://enzyme.expasy.org/EC/4.1.2.8 EC-4.1.2.8] | ||
* Synonym(s): | * Synonym(s): | ||
− | == Reaction(s) | + | == Reaction Formula == |
− | == | + | * With identifiers: |
− | == | + | ** 1 [[INDOLE-3-GLYCEROL-P]][c] '''<=>''' 1 [[GAP]][c] '''+''' 1 [[INDOLE]][c] |
− | * [[ | + | * With common name(s): |
+ | ** 1 (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate[c] '''<=>''' 1 D-glyceraldehyde 3-phosphate[c] '''+''' 1 indole[c] | ||
+ | |||
+ | == Genes associated with this reaction == | ||
+ | Genes have been associated with this reaction based on different elements listed below. | ||
+ | * Gene: [[CHC_T00009102001_1]] | ||
+ | ** Source: [[orthology-galdieria.sulphuraria]] | ||
+ | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
+ | * Gene: [[CHC_T00008842001_1]] | ||
+ | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
+ | * Gene: [[CHC_T00008746001_1]] | ||
+ | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
+ | * Gene: [[CHC_1120]] | ||
+ | ** Source: [[annotation-original_genome]] | ||
+ | *** Assignment: AUTOMATED-NAME-MATCH | ||
+ | * Gene: [[CHC_T00008705001_1]] | ||
+ | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
+ | * Gene: [[CHC_T00008401001]] | ||
+ | ** Source: [[annotation-original_genome]] | ||
+ | *** Assignment: AUTOMATED-NAME-MATCH | ||
+ | * Gene: [[CHC_T00007475001_1]] | ||
+ | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
+ | == Pathways == | ||
+ | * [[TRPSYN-PWY]], L-tryptophan biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=TRPSYN-PWY TRPSYN-PWY] | ||
+ | ** '''6''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-6949]], DIBOA-glucoside biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6949 PWY-6949] | ||
+ | ** '''1''' reactions found over '''6''' reactions in the full pathway | ||
+ | == Reconstruction information == | ||
+ | * Category: [[orthology]] | ||
+ | ** Source: [[orthology-galdieria.sulphuraria]] | ||
+ | *** Tool: [[pantograph]] | ||
+ | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
+ | *** Tool: [[pantograph]] | ||
+ | * Category: [[annotation]] | ||
+ | ** Source: [[annotation-original_genome]] | ||
+ | *** Tool: [[pathwaytools]] | ||
== External links == | == External links == | ||
− | {{#set: common name= | + | * RHEA: |
− | {{#set: | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14081 14081] |
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R02340 R02340] | ||
+ | {{#set: direction=REVERSIBLE}} | ||
+ | {{#set: common name=tryptophan synthase alpha chain}} | ||
+ | {{#set: common name=Tryptophan synthase subunit beta}} | ||
+ | {{#set: ec number=EC-4.1.2.8}} | ||
+ | {{#set: gene associated=CHC_T00009102001_1|CHC_T00008842001_1|CHC_T00008746001_1|CHC_1120|CHC_T00008705001_1|CHC_T00008401001|CHC_T00007475001_1}} | ||
+ | {{#set: in pathway=TRPSYN-PWY|PWY-6949}} | ||
+ | {{#set: reconstruction category=orthology|annotation}} | ||
+ | {{#set: reconstruction source=orthology-galdieria.sulphuraria|annotation-original_genome|orthology-ectocarpus_siliculosus}} | ||
+ | {{#set: reconstruction tool=pantograph|pathwaytools}} |
Latest revision as of 16:41, 9 January 2019
Contents
Reaction RXN0-2381
- direction:
- REVERSIBLE
- common name:
- tryptophan synthase alpha chain
- Tryptophan synthase subunit beta
- ec number:
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 INDOLE-3-GLYCEROL-P[c] <=> 1 GAP[c] + 1 INDOLE[c]
- With common name(s):
- 1 (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate[c] <=> 1 D-glyceraldehyde 3-phosphate[c] + 1 indole[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: CHC_T00009102001_1
- Source: orthology-galdieria.sulphuraria
- Source: orthology-ectocarpus_siliculosus
- Gene: CHC_T00008842001_1
- Source: orthology-ectocarpus_siliculosus
- Gene: CHC_T00008746001_1
- Source: orthology-ectocarpus_siliculosus
- Gene: CHC_1120
- Source: annotation-original_genome
- Assignment: AUTOMATED-NAME-MATCH
- Source: annotation-original_genome
- Gene: CHC_T00008705001_1
- Source: orthology-ectocarpus_siliculosus
- Gene: CHC_T00008401001
- Source: annotation-original_genome
- Assignment: AUTOMATED-NAME-MATCH
- Source: annotation-original_genome
- Gene: CHC_T00007475001_1
- Source: orthology-ectocarpus_siliculosus
Pathways
- TRPSYN-PWY, L-tryptophan biosynthesis: TRPSYN-PWY
- 6 reactions found over 6 reactions in the full pathway
- PWY-6949, DIBOA-glucoside biosynthesis: PWY-6949
- 1 reactions found over 6 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-galdieria.sulphuraria
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-galdieria.sulphuraria
- Category: annotation
- Source: annotation-original_genome
- Tool: pathwaytools
- Source: annotation-original_genome
External links