Difference between revisions of "ISOCITDEH-RXN"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ISOCITDEH-RXN ISOCITDEH-RXN] == * direction: ** REVERSIBLE * ec number: ** [http://enzyme.expasy.or...") |
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** Source: [[orthology-ectocarpus_siliculosus]] | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
== Pathways == | == Pathways == | ||
| + | * [[FERMENTATION-PWY]], mixed acid fermentation: [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY] | ||
| + | ** '''11''' reactions found over '''16''' reactions in the full pathway | ||
| + | * [[PWY-7254]], TCA cycle VII (acetate-producers): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7254 PWY-7254] | ||
| + | ** '''7''' reactions found over '''9''' reactions in the full pathway | ||
| + | * [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY] | ||
| + | ** '''8''' reactions found over '''11''' reactions in the full pathway | ||
* [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913] | * [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913] | ||
** '''10''' reactions found over '''11''' reactions in the full pathway | ** '''10''' reactions found over '''11''' reactions in the full pathway | ||
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* [[TCA]], TCA cycle I (prokaryotic): [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA] | * [[TCA]], TCA cycle I (prokaryotic): [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA] | ||
** '''9''' reactions found over '''10''' reactions in the full pathway | ** '''9''' reactions found over '''10''' reactions in the full pathway | ||
* [[P23-PWY]], reductive TCA cycle I: [http://metacyc.org/META/NEW-IMAGE?object=P23-PWY P23-PWY] | * [[P23-PWY]], reductive TCA cycle I: [http://metacyc.org/META/NEW-IMAGE?object=P23-PWY P23-PWY] | ||
** '''10''' reactions found over '''12''' reactions in the full pathway | ** '''10''' reactions found over '''12''' reactions in the full pathway | ||
| − | * [[ | + | * [[REDCITCYC]], TCA cycle VIII (helicobacter): [http://metacyc.org/META/NEW-IMAGE?object=REDCITCYC REDCITCYC] |
| − | ** ''' | + | ** '''5''' reactions found over '''9''' reactions in the full pathway |
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* [[PWY-6549]], L-glutamine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6549 PWY-6549] | * [[PWY-6549]], L-glutamine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6549 PWY-6549] | ||
** '''9''' reactions found over '''9''' reactions in the full pathway | ** '''9''' reactions found over '''9''' reactions in the full pathway | ||
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* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969] | * [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969] | ||
** '''8''' reactions found over '''12''' reactions in the full pathway | ** '''8''' reactions found over '''12''' reactions in the full pathway | ||
| + | * [[PWY-7268]], NAD/NADP-NADH/NADPH cytosolic interconversion (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7268 PWY-7268] | ||
| + | ** '''3''' reactions found over '''5''' reactions in the full pathway | ||
| + | * [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728] | ||
| + | ** '''9''' reactions found over '''19''' reactions in the full pathway | ||
| + | * [[PWY-7124]], ethylene biosynthesis V (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7124 PWY-7124] | ||
| + | ** '''8''' reactions found over '''10''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* Category: [[orthology]] | * Category: [[orthology]] | ||
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** Source: [[orthology-galdieria.sulphuraria]] | ** Source: [[orthology-galdieria.sulphuraria]] | ||
| + | *** Tool: [[pantograph]] | ||
| + | ** Source: [[orthology-ectocarpus_siliculosus]] | ||
*** Tool: [[pantograph]] | *** Tool: [[pantograph]] | ||
== External links == | == External links == | ||
* LIGAND-RXN: | * LIGAND-RXN: | ||
** [http://www.genome.jp/dbget-bin/www_bget?R00267 R00267] | ** [http://www.genome.jp/dbget-bin/www_bget?R00267 R00267] | ||
| + | * UNIPROT: | ||
| + | ** [http://www.uniprot.org/uniprot/P16100 P16100] | ||
| + | ** [http://www.uniprot.org/uniprot/P33198 P33198] | ||
| + | ** [http://www.uniprot.org/uniprot/P41561 P41561] | ||
| + | ** [http://www.uniprot.org/uniprot/P41562 P41562] | ||
| + | ** [http://www.uniprot.org/uniprot/P50214 P50214] | ||
| + | ** [http://www.uniprot.org/uniprot/P41560 P41560] | ||
| + | ** [http://www.uniprot.org/uniprot/P56063 P56063] | ||
| + | ** [http://www.uniprot.org/uniprot/Q9PHY3 Q9PHY3] | ||
| + | ** [http://www.uniprot.org/uniprot/P21954 P21954] | ||
| + | ** [http://www.uniprot.org/uniprot/P08200 P08200] | ||
| + | ** [http://www.uniprot.org/uniprot/O29610 O29610] | ||
| + | ** [http://www.uniprot.org/uniprot/Q9JUV7 Q9JUV7] | ||
| + | ** [http://www.uniprot.org/uniprot/Q9CHQ4 Q9CHQ4] | ||
| + | ** [http://www.uniprot.org/uniprot/P39126 P39126] | ||
| + | ** [http://www.uniprot.org/uniprot/P50216 P50216] | ||
| + | ** [http://www.uniprot.org/uniprot/P50215 P50215] | ||
| + | ** [http://www.uniprot.org/uniprot/Q04467 Q04467] | ||
| + | ** [http://www.uniprot.org/uniprot/P50217 P50217] | ||
| + | ** [http://www.uniprot.org/uniprot/P41939 P41939] | ||
| + | ** [http://www.uniprot.org/uniprot/P48735 P48735] | ||
| + | ** [http://www.uniprot.org/uniprot/P53982 P53982] | ||
| + | ** [http://www.uniprot.org/uniprot/P50218 P50218] | ||
| + | ** [http://www.uniprot.org/uniprot/O65853 O65853] | ||
| + | ** [http://www.uniprot.org/uniprot/Q40345 Q40345] | ||
| + | ** [http://www.uniprot.org/uniprot/O14254 O14254] | ||
| + | ** [http://www.uniprot.org/uniprot/O75874 O75874] | ||
* PIR: | * PIR: | ||
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A10759 A10759] | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A10759 A10759] | ||
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T44658 T44658] | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T44658 T44658] | ||
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T46280 T46280] | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T46280 T46280] | ||
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{{#set: direction=REVERSIBLE}} | {{#set: direction=REVERSIBLE}} | ||
{{#set: ec number=EC-1.1.1.42}} | {{#set: ec number=EC-1.1.1.42}} | ||
{{#set: gene associated=CHC_T00009580001_1}} | {{#set: gene associated=CHC_T00009580001_1}} | ||
| − | {{#set: in pathway=PWY- | + | {{#set: in pathway=FERMENTATION-PWY|PWY-7254|P105-PWY|PWY-5913|TCA|P23-PWY|REDCITCYC|PWY-6549|PWY-6969|PWY-7268|PWY-6728|PWY-7124}} |
{{#set: reconstruction category=orthology}} | {{#set: reconstruction category=orthology}} | ||
| − | {{#set: reconstruction source= | + | {{#set: reconstruction source=orthology-galdieria.sulphuraria|orthology-ectocarpus_siliculosus}} |
{{#set: reconstruction tool=pantograph}} | {{#set: reconstruction tool=pantograph}} | ||
Latest revision as of 17:38, 9 January 2019
Contents
Reaction ISOCITDEH-RXN
- direction:
- REVERSIBLE
- ec number:
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 NADP[c] + 1 THREO-DS-ISO-CITRATE[c] <=> 1 NADPH[c] + 1 2-KETOGLUTARATE[c] + 1 CARBON-DIOXIDE[c]
- With common name(s):
- 1 NADP+[c] + 1 D-threo-isocitrate[c] <=> 1 NADPH[c] + 1 2-oxoglutarate[c] + 1 CO2[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: CHC_T00009580001_1
- Source: orthology-galdieria.sulphuraria
- Source: orthology-ectocarpus_siliculosus
Pathways
- FERMENTATION-PWY, mixed acid fermentation: FERMENTATION-PWY
- 11 reactions found over 16 reactions in the full pathway
- PWY-7254, TCA cycle VII (acetate-producers): PWY-7254
- 7 reactions found over 9 reactions in the full pathway
- P105-PWY, TCA cycle IV (2-oxoglutarate decarboxylase): P105-PWY
- 8 reactions found over 11 reactions in the full pathway
- PWY-5913, partial TCA cycle (obligate autotrophs): PWY-5913
- 10 reactions found over 11 reactions in the full pathway
- TCA, TCA cycle I (prokaryotic): TCA
- 9 reactions found over 10 reactions in the full pathway
- P23-PWY, reductive TCA cycle I: P23-PWY
- 10 reactions found over 12 reactions in the full pathway
- REDCITCYC, TCA cycle VIII (helicobacter): REDCITCYC
- 5 reactions found over 9 reactions in the full pathway
- PWY-6549, L-glutamine biosynthesis III: PWY-6549
- 9 reactions found over 9 reactions in the full pathway
- PWY-6969, TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): PWY-6969
- 8 reactions found over 12 reactions in the full pathway
- PWY-7268, NAD/NADP-NADH/NADPH cytosolic interconversion (yeast): PWY-7268
- 3 reactions found over 5 reactions in the full pathway
- PWY-6728, methylaspartate cycle: PWY-6728
- 9 reactions found over 19 reactions in the full pathway
- PWY-7124, ethylene biosynthesis V (engineered): PWY-7124
- 8 reactions found over 10 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-galdieria.sulphuraria
- Tool: pantograph
- Source: orthology-ectocarpus_siliculosus
- Tool: pantograph
- Source: orthology-galdieria.sulphuraria
External links
- LIGAND-RXN:
- UNIPROT:
- PIR:
