Difference between revisions of "RIBULP3EPIM-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBULP3EPIM-RXN RIBULP3EPIM-RXN] == * direction: ** REVERSIBLE * common name: ** similar to Ribulos...")
 
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== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[CHC_T00008270001]]
 
−
** Source: [[annotation-original_genome]]
 
−
*** Assignment: AUTOMATED-NAME-MATCH
 
 
* Gene: [[CHC_T00008270001_1]]
 
* Gene: [[CHC_T00008270001_1]]
 
** Source: [[orthology-galdieria.sulphuraria]]
 
** Source: [[orthology-galdieria.sulphuraria]]
Line 29: Line 26:
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 +
* Gene: [[CHC_T00008270001]]
 +
** Source: [[annotation-original_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 
== Pathways  ==
 
== Pathways  ==
 +
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY]
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 
* [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY]
 
* [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY]
 
** '''11''' reactions found over '''15''' reactions in the full pathway
 
** '''11''' reactions found over '''15''' reactions in the full pathway
−
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
 
−
** '''13''' reactions found over '''13''' reactions in the full pathway
 
−
* [[P21-PWY]], pentose phosphate pathway (partial): [http://metacyc.org/META/NEW-IMAGE?object=P21-PWY P21-PWY]
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723]
 
−
** '''10''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-1861]], formaldehyde assimilation II (RuMP Cycle): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861]
 
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
 
* [[P122-PWY]], heterolactic fermentation: [http://metacyc.org/META/NEW-IMAGE?object=P122-PWY P122-PWY]
 
* [[P122-PWY]], heterolactic fermentation: [http://metacyc.org/META/NEW-IMAGE?object=P122-PWY P122-PWY]
 
** '''15''' reactions found over '''18''' reactions in the full pathway
 
** '''15''' reactions found over '''18''' reactions in the full pathway
−
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY]
 
−
** '''11''' reactions found over '''12''' reactions in the full pathway
 
 
* [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch): [http://metacyc.org/META/NEW-IMAGE?object=NONOXIPENT-PWY NONOXIPENT-PWY]
 
* [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch): [http://metacyc.org/META/NEW-IMAGE?object=NONOXIPENT-PWY NONOXIPENT-PWY]
 
** '''5''' reactions found over '''5''' reactions in the full pathway
 
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723]
 +
** '''10''' reactions found over '''10''' reactions in the full pathway
 +
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
 +
** '''13''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-1861]], formaldehyde assimilation II (RuMP Cycle): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861]
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[P21-PWY]], pentose phosphate pathway (partial): [http://metacyc.org/META/NEW-IMAGE?object=P21-PWY P21-PWY]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 +
** Source: [[orthology-galdieria.sulphuraria]]
 +
*** Tool: [[pantograph]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 
** Source: [[orthology-arabidopsis_thaliana]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
 
** Source: [[orthology-ectocarpus_siliculosus]]
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-galdieria.sulphuraria]]
 
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
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* RHEA:
 
* RHEA:
 
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13677 13677]
 
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13677 13677]
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R01529 R01529]
 
 
* UNIPROT:
 
* UNIPROT:
 
** [http://www.uniprot.org/uniprot/P40117 P40117]
 
** [http://www.uniprot.org/uniprot/P40117 P40117]
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** [http://www.uniprot.org/uniprot/O23782 O23782]
 
** [http://www.uniprot.org/uniprot/O23782 O23782]
 
** [http://www.uniprot.org/uniprot/P51012 P51012]
 
** [http://www.uniprot.org/uniprot/P51012 P51012]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R01529 R01529]
 
{{#set: direction=REVERSIBLE}}
 
{{#set: direction=REVERSIBLE}}
 
{{#set: common name=similar to Ribulose-phosphate 3-epimerase}}
 
{{#set: common name=similar to Ribulose-phosphate 3-epimerase}}
 
{{#set: ec number=EC-5.1.3.1}}
 
{{#set: ec number=EC-5.1.3.1}}
−
{{#set: gene associated=CHC_T00008270001|CHC_T00008270001_1|CHC_T00006121001_1}}
+
{{#set: gene associated=CHC_T00008270001_1|CHC_T00006121001_1|CHC_T00008270001}}
−
{{#set: in pathway=P124-PWY|CALVIN-PWY|P21-PWY|PWY-5723|PWY-1861|P122-PWY|P185-PWY|NONOXIPENT-PWY}}
+
{{#set: in pathway=P185-PWY|P124-PWY|P122-PWY|NONOXIPENT-PWY|PWY-5723|CALVIN-PWY|PWY-1861|P21-PWY}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=annotation-original_genome|orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus|orthology-galdieria.sulphuraria}}
+
{{#set: reconstruction source=orthology-galdieria.sulphuraria|annotation-original_genome|orthology-arabidopsis_thaliana|orthology-ectocarpus_siliculosus}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 17:42, 9 January 2019

Reaction RIBULP3EPIM-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • similar to Ribulose-phosphate 3-epimerase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • P185-PWY, formaldehyde assimilation III (dihydroxyacetone cycle): P185-PWY
    • 11 reactions found over 12 reactions in the full pathway
  • P124-PWY, Bifidobacterium shunt: P124-PWY
    • 11 reactions found over 15 reactions in the full pathway
  • P122-PWY, heterolactic fermentation: P122-PWY
    • 15 reactions found over 18 reactions in the full pathway
  • NONOXIPENT-PWY, pentose phosphate pathway (non-oxidative branch): NONOXIPENT-PWY
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-5723, Rubisco shunt: PWY-5723
    • 10 reactions found over 10 reactions in the full pathway
  • CALVIN-PWY, Calvin-Benson-Bassham cycle: CALVIN-PWY
    • 13 reactions found over 13 reactions in the full pathway
  • PWY-1861, formaldehyde assimilation II (RuMP Cycle): PWY-1861
    • 7 reactions found over 9 reactions in the full pathway
  • P21-PWY, pentose phosphate pathway (partial): P21-PWY
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/ccrgem/index.php?title=RIBULP3EPIM-RXN&oldid=23414"